Overview
- External ontology
- komodo.medium:999 (source link unavailable) — HALORHODOSPIRA medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.2, 'max': 7.4}
- Notes
- Source: KOMODO ModelSEED | ID: 999 | DSMZ Medium: 999 (mediadive.medium:999) | Aerobic: No
Composition
flowchart LR
CultureMech_006984["halorhodospira_medium"]
ing0_KH2PO4["KH2PO4"]
CultureMech_006984 --> ing0_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing0_KH2PO4 -.-> CHEBI_63036
ing1_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_006984 --> ing1_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing1_CaCl2_x_2_H2O -.-> CHEBI_86158
ing2_NH4Cl["NH4Cl"]
CultureMech_006984 --> ing2_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing2_NH4Cl -.-> CHEBI_31206
ing3_NaCl["NaCl"]
CultureMech_006984 --> ing3_NaCl
CHEBI_26710["CHEBI:26710"]
ing3_NaCl -.-> CHEBI_26710
ing4_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_006984 --> ing4_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing4_MgCl2_x_6_H2O -.-> CHEBI_86345
ing5_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_006984 --> ing5_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing5_MgSO4_x_7_H2O -.-> CHEBI_31795
ing6_NaHCO3["NaHCO3"]
CultureMech_006984 --> ing6_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing6_NaHCO3 -.-> CHEBI_32139
ing7_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_006984 --> ing7_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing7_Na2S_x_9_H2O -.-> CHEBI_76209
ing8_H3BO3["H3BO3"]
CultureMech_006984 --> ing8_H3BO3
CHEBI_33118["CHEBI:33118"]
ing8_H3BO3 -.-> CHEBI_33118
ing9_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_006984 --> ing9_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing9_FeSO4_x_7_H2O -.-> CHEBI_75836
ing10_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_006984 --> ing10_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing10_CoCl2_x_6_H2O -.-> CHEBI_53503
ing11_MnCl2_x_2_H2O["MnCl2 x 2 H2O"]
CultureMech_006984 --> ing11_MnCl2_x_2_H2O
CHEBI_131395["CHEBI:131395"]
ing11_MnCl2_x_2_H2O -.-> CHEBI_131395
ing12_ZnCl2["ZnCl2"]
CultureMech_006984 --> ing12_ZnCl2
CHEBI_49976["CHEBI:49976"]
ing12_ZnCl2 -.-> CHEBI_49976
ing13_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_006984 --> ing13_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing13_NiCl2_x_6_H2O -.-> CHEBI_34887
ing14_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_006984 --> ing14_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing14_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing15_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_006984 --> ing15_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing15_CuCl2_x_2_H2O -.-> CHEBI_86318
ing16_Biotine["Biotine"]
CultureMech_006984 --> ing16_Biotine
CHEBI_15956["CHEBI:15956"]
ing16_Biotine -.-> CHEBI_15956
ing17_p_Aminobenzoate["p-Aminobenzoate"]
CultureMech_006984 --> ing17_p_Aminobenzoate
CHEBI_17836["CHEBI:17836"]
ing17_p_Aminobenzoate -.-> CHEBI_17836
ing18_Thiamine["Thiamine"]
CultureMech_006984 --> ing18_Thiamine
CHEBI_18385["CHEBI:18385"]
ing18_Thiamine -.-> CHEBI_18385
ing19_Pantothenate["Pantothenate"]
CultureMech_006984 --> ing19_Pantothenate
CHEBI_16454["CHEBI:16454"]
ing19_Pantothenate -.-> CHEBI_16454
ing20_Pyridoxamine["Pyridoxamine"]
CultureMech_006984 --> ing20_Pyridoxamine
CHEBI_16410["CHEBI:16410"]
ing20_Pyridoxamine -.-> CHEBI_16410
ing21_Vitamine_B12["Vitamine B12"]
CultureMech_006984 --> ing21_Vitamine_B12
CHEBI_176843["CHEBI:176843"]
ing21_Vitamine_B12 -.-> CHEBI_176843
ing22_Nicotinate["Nicotinate"]
CultureMech_006984 --> ing22_Nicotinate
CHEBI_15940["CHEBI:15940"]
ing22_Nicotinate -.-> CHEBI_15940
Ingredients (23)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
KH2PO4
H2O4P.K 136.084 g/mol
|
1 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 2 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.05 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 3 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.5 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 4 |
NaCl
Cl.Na 58.443 g/mol
|
100 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 5 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
2 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 6 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
1 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 7 |
NaHCO3
CHO3.Na 84.006 g/mol
|
2 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 8 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
0.75 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
|
| 9 |
H3BO3
H3BO3 61.833 g/mol
|
0.3 G_PER_L |
CHEBI:33118
boric acid
|
|
| 10 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
1.1 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 11 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.19 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 12 |
MnCl2 x 2 H2O
Cl2Mn.2H2O 161.874 g/mol
|
0.05 G_PER_L |
CHEBI:131395
manganese(II) chloride dihydrate
|
|
| 13 |
ZnCl2
2Cl.Zn 136.296 g/mol
|
0.042 G_PER_L |
CHEBI:49976
zinc dichloride
|
|
| 14 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.024 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 15 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.018 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 16 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.002 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 17 |
Biotine
C10H16N2O3S 244.316 g/mol
|
0.002 G_PER_L |
CHEBI:15956
biotin
|
|
| 18 |
p-Aminobenzoate
C7H6NO2 136.13 g/mol
|
0.01 G_PER_L |
CHEBI:17836
4-aminobenzoate
|
|
| 19 |
Thiamine
C12H17N4OS 265.362 g/mol
|
0.01 G_PER_L |
CHEBI:18385
thiamine(1+)
|
|
| 20 |
Pantothenate
C9H16NO5 218.229 g/mol
|
0.005 G_PER_L |
CHEBI:16454
pantothenate
|
|
| 21 |
Pyridoxamine
C8H12N2O2 168.196 g/mol
|
0.05 G_PER_L |
CHEBI:16410
pyridoxamine
|
|
| 22 | Vitamine B12 | 0.02 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 23 |
Nicotinate
C6H5NO2 123.111 g/mol
|
0.02 G_PER_L |
CHEBI:15940
nicotinic acid
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_999_HALORHODOSPIRA_medium (CultureMech:006984)
- halorhodospira_medium (CultureMech:002184)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 999 |
| 2026-02-03T11:18:55.458125 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 999 |
| 2026-02-06T05:10:13.934562Z | invalid-chebi-removal | Removed 1 invalid CHEBI ID(s) | Removed CHEBI IDs with invalid format (7+ digits) from MicrobeMediaParam source data |
| 2026-03-13T06:19:45.443714Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006984 |
| 2026-03-17T06:29:42.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:03.515139+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "HALORHODOSPIRA medium" to "halorhodospira_medium" for consistent matching |
| 2026-05-20T06:00:55.427889+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '7.2-7.4' -> {'min': 7.2, 'max': 7.4} |
| 2026-06-05T07:40:28.542593+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 20 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:46.655432+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:03.501957+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_999_HALORHODOSPIRA_medium, halorhodospira_medium |
| 2026-08-06T03:05:03.502005+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint eee0156c9d8f51496d661c2c0155318a3d3d1522b8ef35c5d8b9ff43969ada33 |