Overview
- External ontology
- MEDIADB:204 (source link unavailable) — Medium with Met, Asp, Gly, Arg; Fang et al
- Applications
-
- Cultivation of genome-sequenced organisms
- Metabolic modeling
- Systems biology research
- Notes
- Source: MediaDB (Chemically-defined media for genome-sequenced organisms) Reference: https://mediadb.systemsbiology.net/
Composition
flowchart LR
CultureMech_007097["medium_with_met_asp_gly_arg_fang_et_al"]
ing0_Glycine["Glycine"]
CultureMech_007097 --> ing0_Glycine
CHEBI_15428["CHEBI:15428"]
ing0_Glycine -.-> CHEBI_15428
ing1_L_Aspartate["L-Aspartate"]
CultureMech_007097 --> ing1_L_Aspartate
ing2_L_Methionine["L-Methionine"]
CultureMech_007097 --> ing2_L_Methionine
CHEBI_16643["CHEBI:16643"]
ing2_L_Methionine -.-> CHEBI_16643
ing3_Glycerol["Glycerol"]
CultureMech_007097 --> ing3_Glycerol
CHEBI_17754["CHEBI:17754"]
ing3_Glycerol -.-> CHEBI_17754
ing4_Starch["Starch"]
CultureMech_007097 --> ing4_Starch
CHEBI_28017["CHEBI:28017"]
ing4_Starch -.-> CHEBI_28017
ing5_Arginine["Arginine"]
CultureMech_007097 --> ing5_Arginine
CHEBI_29016["CHEBI:29016"]
ing5_Arginine -.-> CHEBI_29016
ing6_Calcium_chloride_anhydrous["Calcium chloride anhydrous"]
CultureMech_007097 --> ing6_Calcium_chloride_anhydrous
CHEBI_3312["CHEBI:3312"]
ing6_Calcium_chloride_anhydrous -.-> CHEBI_3312
ing7_Potassium_dibasic_phosphate["Potassium dibasic phosphate"]
CultureMech_007097 --> ing7_Potassium_dibasic_phosphate
CHEBI_131527["CHEBI:131527"]
ing7_Potassium_dibasic_phosphate -.-> CHEBI_131527
ing8_Sodium_sulfate["Sodium sulfate"]
CultureMech_007097 --> ing8_Sodium_sulfate
CHEBI_32149["CHEBI:32149"]
ing8_Sodium_sulfate -.-> CHEBI_32149
ing9_Potassium_dihydrogen_phosphate["Potassium dihydrogen phosphate"]
CultureMech_007097 --> ing9_Potassium_dihydrogen_phosphate
CHEBI_63036["CHEBI:63036"]
ing9_Potassium_dihydrogen_phosphate -.-> CHEBI_63036
ing10_Magnesium_sulfate["Magnesium sulfate"]
CultureMech_007097 --> ing10_Magnesium_sulfate
CHEBI_32599["CHEBI:32599"]
ing10_Magnesium_sulfate -.-> CHEBI_32599
ing11_Manganese_sulfate["Manganese sulfate"]
CultureMech_007097 --> ing11_Manganese_sulfate
CHEBI_86364["CHEBI:86364"]
ing11_Manganese_sulfate -.-> CHEBI_86364
ing12_Ammonium_chloride["Ammonium chloride"]
CultureMech_007097 --> ing12_Ammonium_chloride
CHEBI_31206["CHEBI:31206"]
ing12_Ammonium_chloride -.-> CHEBI_31206
ing13_Ferrous_sulfate["Ferrous sulfate"]
CultureMech_007097 --> ing13_Ferrous_sulfate
CHEBI_75832["CHEBI:75832"]
ing13_Ferrous_sulfate -.-> CHEBI_75832
ing14_Ammonium_nitrate["Ammonium nitrate"]
CultureMech_007097 --> ing14_Ammonium_nitrate
CHEBI_63038["CHEBI:63038"]
ing14_Ammonium_nitrate -.-> CHEBI_63038
Ingredients (15)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Glycine
C2H5NO2 75.067 g/mol
|
5.32836 MILLIMOLAR |
CHEBI:15428
glycine
|
Cross-references: KEGG:gly |
| 2 | L-Aspartate | 15.0263 MILLIMOLAR | Cross-references: KEGG:asp-L | |
| 3 |
L-Methionine
C5H11NO2S 149.215 g/mol
|
2.68078 MILLIMOLAR |
CHEBI:16643
L-methionine
|
Cross-references: KEGG:met-L |
| 4 |
Glycerol
C3H8O3 92.094 g/mol
|
27.147 MILLIMOLAR |
CHEBI:17754
glycerol
|
Cross-references: KEGG:glyc |
| 5 | Starch | 154.32 MILLIMOLAR |
CHEBI:28017
starch
|
|
| 6 |
Arginine
C6H14N4O2 174.204 g/mol
|
5.7405 MILLIMOLAR |
CHEBI:29016
arginine
|
|
| 7 |
Calcium chloride anhydrous
Ca.2Cl 110.984 g/mol
|
0.0090106 MILLIMOLAR |
CHEBI:3312
calcium dichloride
|
|
| 8 |
Potassium dibasic phosphate
HO4P.2K 174.174 g/mol
|
34.443 MILLIMOLAR |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 9 |
Sodium sulfate
2Na.O4S 142.043 g/mol
|
1.408 MILLIMOLAR |
CHEBI:32149
sodium sulfate
|
|
| 10 |
Potassium dihydrogen phosphate
H2O4P.K 136.084 g/mol
|
14.6965 MILLIMOLAR |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 11 |
Magnesium sulfate
Mg.O4S 120.368 g/mol
|
0.16229 MILLIMOLAR |
CHEBI:32599
magnesium sulfate
|
|
| 12 |
Manganese sulfate
H2O.Mn.O4S 169.016 g/mol
|
0.008965 MILLIMOLAR |
CHEBI:86364
manganese(II) sulfate monohydrate
|
|
| 13 |
Ammonium chloride
Cl.H4N 53.492 g/mol
|
18.6947 MILLIMOLAR |
CHEBI:31206
ammonium chloride
|
|
| 14 |
Ferrous sulfate
Fe.O4S 151.908 g/mol
|
0.0071929 MILLIMOLAR |
CHEBI:75832
iron(2+) sulfate (anhydrous)
|
|
| 15 |
Ammonium nitrate
H4N.NO3 80.043 g/mol
|
2.49837 MILLIMOLAR |
CHEBI:63038
ammonium nitrate
|
Preparation
- Dissolve all ingredients in distilled water to specified concentrations
- Adjust pH if specified in original formulation
- Sterilize by filtration (0.22 μm) to preserve heat-sensitive components
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- medium_with_met_asp_gly_arg_fang_et_al (CultureMech:007097)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T07:21:44.415986Z | mediadb-import | Imported from MediaDB | Source: MediaDB (Institute for Systems Biology), Medium ID: 204, Reference: Mazumdar et al. (2014) PLOS One |
| 2026-03-13T06:19:46.117862Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007097 |
| 2026-03-17T06:30:57.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:04.250985+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Medium with Met, Asp, Gly, Arg; Fang et al" to "medium_with_met_asp_gly_arg_fang_et_al" for consistent matching |
| 2026-06-05T07:41:30.380288+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 10 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-08-06T03:05:44.386524+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint b4c4df84c023709d4a6c90e4150aa8f2b5ac4c43807ec98983bf876dcdb4376c |