Overview
- External ontology
- jcm.grmd:1445 (source link unavailable) — PMX.108 MEDIUM
- Applications
-
- Microbial cultivation
- Notes
- Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1445
Composition
flowchart LR
CultureMech_015869["pmx_108_medium"]
ing0_NH4Cl["NH4Cl"]
CultureMech_015869 --> ing0_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing0_NH4Cl -.-> CHEBI_31206
ing1_KH2PO4["KH2PO4"]
CultureMech_015869 --> ing1_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing1_KH2PO4 -.-> CHEBI_63036
ing2_MgCl2_6H2O["MgCl2•6H2O"]
CultureMech_015869 --> ing2_MgCl2_6H2O
ing3_CaCl2_2H2O["CaCl2•2H2O"]
CultureMech_015869 --> ing3_CaCl2_2H2O
ing4_Sodium_aceate_3H2O["Sodium aceate•3H2O"]
CultureMech_015869 --> ing4_Sodium_aceate_3H2O
ing5_Yeast_extract["Yeast extract"]
CultureMech_015869 --> ing5_Yeast_extract
ing6_Casamino_acids__BD_Difico_["Casamino acids (BD-Difico)"]
CultureMech_015869 --> ing6_Casamino_acids__BD_Difico_
ing7_Tryptone__BD_Difico_["Tryptone (BD-Difico)"]
CultureMech_015869 --> ing7_Tryptone__BD_Difico_
ing8_Trace_mineral_solution__see_Medium_No__852__["Trace mineral solution (see Medium No. 852 )"]
CultureMech_015869 --> ing8_Trace_mineral_solution__see_Medium_No__852__
ing9_Se_W_solution__see_below_["Se/W solution (see below)"]
CultureMech_015869 --> ing9_Se_W_solution__see_below_
ing10_Trace_vitamins_solution__see_Medium_No__284__["Trace vitamins solution (see Medium No. 284 )"]
CultureMech_015869 --> ing10_Trace_vitamins_solution__see_Medium_No__284__
ing11_Resazurin["Resazurin"]
CultureMech_015869 --> ing11_Resazurin
CHEBI_8806["CHEBI:8806"]
ing11_Resazurin -.-> CHEBI_8806
ing12_Distilled_water["Distilled water"]
CultureMech_015869 --> ing12_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing12_Distilled_water -.-> CHEBI_15377
ing13_8__NaHCO3_solution_["8% NaHCO3 solution*"]
CultureMech_015869 --> ing13_8__NaHCO3_solution_
ing14_5__L_Cysteine_HCl_H2O_solution["5% L-Cysteine•HCl•H2O solution"]
CultureMech_015869 --> ing14_5__L_Cysteine_HCl_H2O_solution
ing15_5__Na2S_9H2O_solution["5% Na2S•9H2O solution"]
CultureMech_015869 --> ing15_5__Na2S_9H2O_solution
ing16_Na2SeO3["Na2SeO3"]
CultureMech_015869 --> ing16_Na2SeO3
CHEBI_48843["CHEBI:48843"]
ing16_Na2SeO3 -.-> CHEBI_48843
ing17_Na2WO4_2H2O["Na2WO4•2H2O"]
CultureMech_015869 --> ing17_Na2WO4_2H2O
ing18_Distilled_water["Distilled water"]
CultureMech_015869 --> ing18_Distilled_water
ing18_Distilled_water -.-> CHEBI_15377
Ingredients (19)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.54 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 2 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.14 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 3 | MgCl2•6H2O | 0.2 G_PER_L | ||
| 4 | CaCl2•2H2O | 0.15 G_PER_L | ||
| 5 | Sodium aceate•3H2O | 1.36 G_PER_L | ||
| 6 | Yeast extract | 0.09 G_PER_L | ||
| 7 | Casamino acids (BD-Difico) | 0.5 G_PER_L | ||
| 8 | Tryptone (BD-Difico) | 1.5 G_PER_L | ||
| 9 | Trace mineral solution (see Medium No. 852 ) | 1.0 ML_PER_L | ||
| 10 | Se/W solution (see below) | 1.0 ML_PER_L | ||
| 11 | Trace vitamins solution (see Medium No. 284 ) | 2.0 ML_PER_L | ||
| 12 |
Resazurin
C12H7NO4 229.191 g/mol
|
1.0 MG_PER_L |
CHEBI:8806
Resazurin
|
|
| 13 |
Distilled water
H2O 18.015 g/mol
|
970.0 ML_PER_L |
CHEBI:15377
water
|
|
| 14 | 8% NaHCO3 solution* | 30.0 ML_PER_L | ||
| 15 | 5% L-Cysteine•HCl•H2O solution | 4.0 ML_PER_L | ||
| 16 | 5% Na2S•9H2O solution | 4.0 ML_PER_L | ||
| 17 |
Na2SeO3
2Na.O3Se 172.937 g/mol
|
2.0 MG_PER_L |
CHEBI:48843
disodium selenite
|
|
| 18 | Na2WO4•2H2O | 1.0 MG_PER_L | ||
| 19 |
Distilled water
H2O 18.015 g/mol
|
1.0 ML_PER_L |
CHEBI:15377
water
|
Preparation
- Mix components thoroughly, bring to a boil, and cool down under a N2-CO2 (4:1, v/v) gas stream.
- Distribute the medium into culture vessels under the same gas mixture (e. g., 20 ml medium in 60 ml serum bottles), seal with butyl rubber stoppers and inject 10-20% gas-phase volume of H2, and autoclave.
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- JCM_J1445_PMX_108_MEDIUM (CultureMech:015869)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-06-02T07:09:20.624232+00:00 | jcm-grmd-import | Scraped from JCM GRMD database | Direct import from JCM GRMD=1445. Ingredients captured verbatim; CHEBI/MediaIngredientMech enrichment and category (bacterial/archaea) review are downstream steps. |
| 2026-06-03T02:00:03.501087Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-06-03T07:12:22.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-08-06T03:04:35.690478+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint ab1bea59d44e4abf5327bd7c218e2bd5271a0c53d732aebdc4eeb83fd2163023 |