desulfuromusa_ferrireducens_medium

CultureMech:000464 bacterial COMPLEX LIQUID
Original name: DESULFUROMUSA FERRIREDUCENS MEDIUM

Overview

External ontology
mediadive.medium:1041 (source link unavailable) — DESULFUROMUSA FERRIREDUCENS MEDIUM
Applications
  • Microbial cultivation
pH range
{'min': 7.0, 'max': 7.2}
Notes
Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1041.pdf

Composition

flowchart LR
    CultureMech_000464["desulfuromusa_ferrireducens_medium"]
    ing0_Sea_Salt["Sea Salt"]
    CultureMech_000464 --> ing0_Sea_Salt
    ing1_Yeast_extract["Yeast extract"]
    CultureMech_000464 --> ing1_Yeast_extract
    ing2_Sodium_resazurin["Sodium resazurin"]
    CultureMech_000464 --> ing2_Sodium_resazurin
    CHEBI_8806["CHEBI:8806"]
    ing2_Sodium_resazurin -.-> CHEBI_8806
    ing3_NaHCO3["NaHCO3"]
    CultureMech_000464 --> ing3_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing3_NaHCO3 -.-> CHEBI_32139
    ing4_Na_acetate["Na-acetate"]
    CultureMech_000464 --> ing4_Na_acetate
    CHEBI_32954["CHEBI:32954"]
    ing4_Na_acetate -.-> CHEBI_32954
    ing5_Na2_fumarate["Na2-fumarate"]
    CultureMech_000464 --> ing5_Na2_fumarate
    CHEBI_115156["CHEBI:115156"]
    ing5_Na2_fumarate -.-> CHEBI_115156
    ing6_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_000464 --> ing6_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing6_Na2S_x_9_H2O -.-> CHEBI_76209
    ing7_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_000464 --> ing7_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing7_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing8_NaCl["NaCl"]
    CultureMech_000464 --> ing8_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing8_NaCl -.-> CHEBI_26710
    ing9_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_000464 --> ing9_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing9_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing10_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
    CultureMech_000464 --> ing10_CuSO4_x_5_H2O
    CHEBI_31440["CHEBI:31440"]
    ing10_CuSO4_x_5_H2O -.-> CHEBI_31440
    ing11_AlK_SO4_2_x_12_H2O["AlK(SO4)2 x 12 H2O"]
    CultureMech_000464 --> ing11_AlK_SO4_2_x_12_H2O
    CHEBI_86465["CHEBI:86465"]
    ing11_AlK_SO4_2_x_12_H2O -.-> CHEBI_86465
    ing12_H3BO3["H3BO3"]
    CultureMech_000464 --> ing12_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing12_H3BO3 -.-> CHEBI_33118
    ing13_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_000464 --> ing13_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing13_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing14__NH4_2Ni_SO4_2_x_6_H2O["(NH4)2Ni(SO4)2 x 6 H2O"]
    CultureMech_000464 --> ing14__NH4_2Ni_SO4_2_x_6_H2O
    CHEBI_86149["CHEBI:86149"]
    ing14__NH4_2Ni_SO4_2_x_6_H2O -.-> CHEBI_86149
    ing15_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
    CultureMech_000464 --> ing15_Na2WO4_x_2_H2O
    CHEBI_63939["CHEBI:63939"]
    ing15_Na2WO4_x_2_H2O -.-> CHEBI_63939
    ing16_Na2SeO4["Na2SeO4"]
    CultureMech_000464 --> ing16_Na2SeO4
    CHEBI_77775["CHEBI:77775"]
    ing16_Na2SeO4 -.-> CHEBI_77775
    ing17_Biotin["Biotin"]
    CultureMech_000464 --> ing17_Biotin
    CHEBI_15956["CHEBI:15956"]
    ing17_Biotin -.-> CHEBI_15956
    ing18_Folic_acid["Folic acid"]
    CultureMech_000464 --> ing18_Folic_acid
    CHEBI_27470["CHEBI:27470"]
    ing18_Folic_acid -.-> CHEBI_27470
    ing19_Thiamine_HCl["Thiamine HCl"]
    CultureMech_000464 --> ing19_Thiamine_HCl
    CHEBI_49105["CHEBI:49105"]
    ing19_Thiamine_HCl -.-> CHEBI_49105
    ing20_Riboflavin["Riboflavin"]
    CultureMech_000464 --> ing20_Riboflavin
    CHEBI_17015["CHEBI:17015"]
    ing20_Riboflavin -.-> CHEBI_17015
    ing21_Nicotinic_acid["Nicotinic acid"]
    CultureMech_000464 --> ing21_Nicotinic_acid
    CHEBI_15940["CHEBI:15940"]
    ing21_Nicotinic_acid -.-> CHEBI_15940
    ing22_Calcium_D_____pantothenate["Calcium D-(+)-pantothenate"]
    CultureMech_000464 --> ing22_Calcium_D_____pantothenate
    CHEBI_31345["CHEBI:31345"]
    ing22_Calcium_D_____pantothenate -.-> CHEBI_31345
    ing23_Vitamin_B12["Vitamin B12"]
    CultureMech_000464 --> ing23_Vitamin_B12
    CHEBI_176843["CHEBI:176843"]
    ing23_Vitamin_B12 -.-> CHEBI_176843
    ing24_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
    CultureMech_000464 --> ing24_p_Aminobenzoic_acid
    CHEBI_30753["CHEBI:30753"]
    ing24_p_Aminobenzoic_acid -.-> CHEBI_30753
    ing25__DL__alpha_Lipoic_acid["(DL)-alpha-Lipoic acid"]
    CultureMech_000464 --> ing25__DL__alpha_Lipoic_acid
    CHEBI_16494["CHEBI:16494"]
    ing25__DL__alpha_Lipoic_acid -.-> CHEBI_16494

Ingredients (26)

# Ingredient Concentration Ontology Notes
1 Sea Salt 34.9301 G_PER_L
2 Yeast extract 0.998004 G_PER_L
3 Sodium resazurin
C12H7NO4 229.191 g/mol
0.000499002 G_PER_L CHEBI:8806
Resazurin
4 NaHCO3
CHO3.Na 84.006 g/mol
1.99601 G_PER_L CHEBI:32139
sodium hydrogencarbonate
5 Na-acetate
C2H3O2.Na 82.034 g/mol
1.59681 G_PER_L CHEBI:32954
sodium acetate
6 Na2-fumarate
C4H2O4.2Na 160.036 g/mol
3.19361 G_PER_L CHEBI:115156
disodium fumarate
7 Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
0.299401 G_PER_L CHEBI:76209
sodium sulfide nonahydrate
8 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
30 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
9 NaCl
Cl.Na 58.443 g/mol
10 G_PER_L CHEBI:26710
sodium chloride
10 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
1 G_PER_L CHEBI:86158
calcium chloride dihydrate
11 CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
0.1 G_PER_L CHEBI:31440
copper(II) sulfate pentahydrate
12 AlK(SO4)2 x 12 H2O
Al.12H2O.K.2O4S 474.386 g/mol
0.18 G_PER_L CHEBI:86465
potassium aluminium sulfate dodecahydrate
13 H3BO3
H3BO3 61.833 g/mol
0.1 G_PER_L CHEBI:33118
boric acid
14 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.1 G_PER_L CHEBI:75213
sodium molybdate dihydrate
15 (NH4)2Ni(SO4)2 x 6 H2O
6H2O.2H4N.Ni.2O4S 394.987 g/mol
2.8 G_PER_L CHEBI:86149
ammonium nickel sulfate hexahydrate
16 Na2WO4 x 2 H2O
2H2O.2Na.O4W 329.846 g/mol
0.1 G_PER_L CHEBI:63939
sodium tungstate dihydrate
17 Na2SeO4
2Na.O4Se 188.936 g/mol
0.1 G_PER_L CHEBI:77775
sodium selenate
18 Biotin
C10H16N2O3S 244.316 g/mol
0.02 G_PER_L CHEBI:15956
biotin
19 Folic acid
C19H19N7O6 441.404 g/mol
0.02 G_PER_L CHEBI:27470
folic acid
20 Thiamine HCl
C12H17N4OS.Cl.HCl 337.276 g/mol
0.05 G_PER_L CHEBI:49105
thiamine hydrochloride
21 Riboflavin
C17H20N4O6 376.369 g/mol
0.05 G_PER_L CHEBI:17015
riboflavin
22 Nicotinic acid
C6H5NO2 123.111 g/mol
0.05 G_PER_L CHEBI:15940
nicotinic acid
23 Calcium D-(+)-pantothenate
2C9H16NO5.Ca 476.536 g/mol
0.05 G_PER_L CHEBI:31345
Calcium pantothenate
24 Vitamin B12 0.001 G_PER_L CHEBI:176843
vitamin B12
25 p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
0.05 G_PER_L CHEBI:30753
4-aminobenzoic acid
26 (DL)-alpha-Lipoic acid
C8H14O2S2 206.332 g/mol
0.05 G_PER_L CHEBI:16494
lipoic acid

Preparation

  1. Dissolve ingredients (except bicarbonate, acetate, fumarate, vitamins, and sulfide), then sparge medium with 80% N2 and 20% CO2 gas mixture for 30 - 45 min to make it anoxic. Dispense under same gas atmosphere into anoxic Hungate-type tubes or serum vials and autoclave. Add acetate, fumarate, vitamins and sulfide from sterile anoxic stock solutions prepared under 100% N2 gas and bicarbonate from a sterile anoxic stock solution prepared under 80% N2 and 20% CO2 gas mixture. Stock solutions of vitamins and fumarate should be sterilized by filtration. Adjust pH of the complete medium to 7.0-7.2, if necessary.
  2. First adjust pH to 1.0 with diluted H2SO4, then add and dissolve the salts.

Solutions

Wolfe's mineral elixir

Dose: 1 ML_PER_L

Stock composition
IngredientConcentrationNotes
MnSO4 x H2O 5 G_PER_L
FeSO4 x 7 H2O 1 G_PER_L
CoCl2 x 6 H2O 1.8 G_PER_L
ZnSO4 x 7 H2O 1.8 G_PER_L

Wolin's vitamin solution (10x)

Dose: 1 ML_PER_L

Stock composition
IngredientConcentrationNotes
Pyridoxine hydrochloride 0.1 G_PER_L

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-26T17:53:13.182454Z mediadive-import Imported from MediaDive Source: DSMZ, ID: 1041
2026-02-06T05:10:44.814426Z invalid-chebi-removal Removed 1 invalid CHEBI ID(s) Removed CHEBI IDs with invalid format (7+ digits) from MicrobeMediaParam source data
2026-03-13T06:18:55.542059Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:000464
2026-03-17T06:30:38.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:06.544881+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "DESULFUROMUSA FERRIREDUCENS MEDIUM" to "desulfuromusa_ferrireducens_medium" for consistent matching
2026-05-20T06:01:15.421323+00:00 migrate_ph_range.py MIGRATED_PH_RANGE ph_range '7-7.2' -> {'min': 7.0, 'max': 7.2}
2026-06-05T07:40:58.529960+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 26 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:37:34.722033+00:00 primary-term-regrounding-v1.0 Re-grounded wrong primary term id (OAK-verified) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-06-10T07:46:56.314821+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-07T07:05:22.054066+00:00 apply_cocktail_nesting.py NESTED_FLATTENED_COCKTAIL Moved 5 stock-strength component(s) out of ingredients into 2 solution(s): 4 -> "Wolfe's mineral elixir" @ 1 ml/l; 1 -> "Wolin's vitamin solution (10x)" @ 1 ml/l. Each moved component matched the MediaDive stock by name AND value; bulk ingredients sharing a name were left in place (#150).