medium_for_chlorobium_ferrooxidans

CultureMech:001398 bacterial COMPLEX LIQUID
Original name: MEDIUM FOR CHLOROBIUM FERROOXIDANS

Overview

External ontology
mediadive.medium:29a (source link unavailable) — MEDIUM FOR CHLOROBIUM FERROOXIDANS
Applications
  • Microbial cultivation
pH
6.8
Notes
Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium29a.pdf

Composition

flowchart LR
    CultureMech_001398["medium_for_chlorobium_ferrooxidans"]
    ing0_Bicarbonate["Bicarbonate"]
    CultureMech_001398 --> ing0_Bicarbonate
    ing1_FeSO4["FeSO4"]
    CultureMech_001398 --> ing1_FeSO4
    CHEBI_75832["CHEBI:75832"]
    ing1_FeSO4 -.-> CHEBI_75832
    ing2_Acetate["Acetate"]
    CultureMech_001398 --> ing2_Acetate
    CHEBI_30089["CHEBI:30089"]
    ing2_Acetate -.-> CHEBI_30089
    ing3_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_001398 --> ing3_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing3_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing4_Yeast_extract["Yeast extract"]
    CultureMech_001398 --> ing4_Yeast_extract
    ing5_NaHCO3["NaHCO3"]
    CultureMech_001398 --> ing5_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing5_NaHCO3 -.-> CHEBI_32139
    ing6_Resazurin["Resazurin"]
    CultureMech_001398 --> ing6_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing6_Resazurin -.-> CHEBI_8806
    ing7_Ammonium_chloride["Ammonium chloride"]
    CultureMech_001398 --> ing7_Ammonium_chloride
    CHEBI_31206["CHEBI:31206"]
    ing7_Ammonium_chloride -.-> CHEBI_31206
    ing8_Ammonium_acetate["Ammonium acetate"]
    CultureMech_001398 --> ing8_Ammonium_acetate
    CHEBI_62947["CHEBI:62947"]
    ing8_Ammonium_acetate -.-> CHEBI_62947
    ing9_Pyruvic_acid_sodium_salt["Pyruvic acid sodium salt"]
    CultureMech_001398 --> ing9_Pyruvic_acid_sodium_salt
    CHEBI_50144["CHEBI:50144"]
    ing9_Pyruvic_acid_sodium_salt -.-> CHEBI_50144
    ing10_Dextrose["Dextrose"]
    CultureMech_001398 --> ing10_Dextrose
    CHEBI_17634["CHEBI:17634"]
    ing10_Dextrose -.-> CHEBI_17634
    ing11_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_001398 --> ing11_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing11_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing12_KCl["KCl"]
    CultureMech_001398 --> ing12_KCl
    CHEBI_32588["CHEBI:32588"]
    ing12_KCl -.-> CHEBI_32588
    ing13_KH2PO4["KH2PO4"]
    CultureMech_001398 --> ing13_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing13_KH2PO4 -.-> CHEBI_63036
    ing14_Vitamin_B12["Vitamin B12"]
    CultureMech_001398 --> ing14_Vitamin_B12
    CHEBI_176843["CHEBI:176843"]
    ing14_Vitamin_B12 -.-> CHEBI_176843
    ing15_HCl["HCl"]
    CultureMech_001398 --> ing15_HCl
    CHEBI_17883["CHEBI:17883"]
    ing15_HCl -.-> CHEBI_17883
    ing16_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_001398 --> ing16_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing16_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing17_ZnCl2["ZnCl2"]
    CultureMech_001398 --> ing17_ZnCl2
    CHEBI_49976["CHEBI:49976"]
    ing17_ZnCl2 -.-> CHEBI_49976
    ing18_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_001398 --> ing18_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing18_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing19_H3BO3["H3BO3"]
    CultureMech_001398 --> ing19_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing19_H3BO3 -.-> CHEBI_33118
    ing20_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_001398 --> ing20_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing20_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing21_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_001398 --> ing21_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing21_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing22_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_001398 --> ing22_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing22_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing23_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_001398 --> ing23_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing23_Na2MoO4_x_2_H2O -.-> CHEBI_75213

Ingredients (24)

# Ingredient Concentration Ontology Notes
1 Bicarbonate 10 MILLIMOLAR
2 FeSO4
Fe.O4S 151.908 g/mol
1.5191 G_PER_L CHEBI:75832
iron(2+) sulfate (anhydrous)
3 Acetate
C2H3O2 59.044 g/mol
0.118088 G_PER_L CHEBI:30089
acetate
4 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.543478 G_PER_L CHEBI:86158
calcium chloride dihydrate
5 Yeast extract 0.543478 G_PER_L
6 NaHCO3
CHO3.Na 84.006 g/mol
30 G_PER_L CHEBI:32139
sodium hydrogencarbonate
7 Resazurin
C12H7NO4 229.191 g/mol
0.005 G_PER_L CHEBI:8806
Resazurin
8 Ammonium chloride
Cl.H4N 53.492 g/mol
14 G_PER_L CHEBI:31206
ammonium chloride
9 Ammonium acetate
C2H3O2.H4N 77.083 g/mol
10 G_PER_L CHEBI:62947
ammonium acetate
10 Pyruvic acid sodium salt
C3H3O3.Na 110.044 g/mol
10 G_PER_L CHEBI:50144
sodium pyruvate
11 Dextrose
C6H12O6 180.156 g/mol
10 G_PER_L CHEBI:17634
D-glucose
12 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
20 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
13 KCl
Cl.K 74.551 g/mol
14 G_PER_L CHEBI:32588
potassium chloride
14 KH2PO4
H2O4P.K 136.084 g/mol
14 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
15 Vitamin B12 0.1 G_PER_L CHEBI:176843
vitamin B12
16 HCl
HCl 36.461 g/mol
1.925 G_PER_L CHEBI:17883
hydrogen chloride
17 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
1.5 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
18 ZnCl2
2Cl.Zn 136.296 g/mol
0.07 G_PER_L CHEBI:49976
zinc dichloride
19 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.1 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
20 H3BO3
H3BO3 61.833 g/mol
0.3 G_PER_L CHEBI:33118
boric acid
21 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.19 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
22 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
0.002 G_PER_L CHEBI:86318
copper(II) chloride dihydrate
23 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.024 G_PER_L CHEBI:34887
nickel dichloride
24 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.036 G_PER_L CHEBI:75213
sodium molybdate dihydrate

Preparation

  1. Mix solution D, C and E. Bubble with CO2 in an ice bath under sterile conditions.
  2. Fill 50 ml in each bottle of solution A. Before using add 4 ml solution B and 0.1 ml solution F. To final medium add 10 mM bicarbonate, 10 mM FeSO4 and 2mM acetate.
  3. Adjust pH to 6.8.
  4. Fill in sterile, N2 gassed screw-cap tubes under N2 gas.
  5. At 25C in light the incubation time is about 4 weeks.
  6. Fill 10x 46ml in 100 ml screw-cap bottles. Bubble with N2/CO2 and autoclave 121°C 15 min.
  7. Prepare in a screw-cap bottle, bubble with N2 to replace air, close tightly and autoclave.
  8. Bubble with CO2 and filter sterilize into sterile, gas-tight, 100 ml screw-cap bottle.
  9. Autoclave in a cotton-stoppered Erlenmeyer flask with an outlet tube for medium, connected to a glass outlet at the bottom of the vessel and has, at the other end, a silicon rubber tube with a pinch cock and a bell for aseptic dispensing of the medium into bottles.
  10. Cool to room temperature under an atmosphere of N2/CO2 in an ice bath.
  11. Filter sterilize into sterile, gas-tight, 100 ml screw-cap bottle.
  12. Filter sterilized

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-26T17:53:10.010236Z mediadive-import Imported from MediaDive Source: DSMZ, ID: 29a
2026-03-13T06:19:03.776044Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:001398
2026-03-17T06:30:50.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:15.744454+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "MEDIUM FOR CHLOROBIUM FERROOXIDANS" to "medium_for_chlorobium_ferrooxidans" for consistent matching
2026-06-05T07:41:28.969011+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 21 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:47:06.020065+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.