rumen_bacteria_medium

CultureMech:001429 bacterial COMPLEX LIQUID
Original name: RUMEN BACTERIA MEDIUM

Overview

External ontology
mediadive.medium:330 (source link unavailable) — RUMEN BACTERIA MEDIUM
Applications
  • Microbial cultivation
pH range
{'min': 6.7, 'max': 6.8}
Notes
Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium330.pdf Superseded historical provenance, not a current formulation claim: Commercial Product: LB Medium (Luria-Bertani, Miller formulation) Supplier: Multiple suppliers (Difco, Sigma, etc.) Catalog: Multiple (L3522 Sigma, 244520 BD) Source: https://www.laboratorynotes.com/preparation-of-luria-bertani-lb-miller-broth/ Accessed: 2026-03-28 Constituent composition researched from product specification. The source explicitly states nominal final volume 1003 ml. Listed liquid inputs total 1003.6 ml; do not substitute that sum, assume volume additivity, or claim measured precision. Main mass rates use the stated 1.003 L denominator, rounded to six significant digits. Stock batch masses without a final-volume instruction remain in notes. Preparation stages and the strain-specific 30 ml/l rumen-fluid supplement remain source context, not a base ingredient or new growth association. Preserve CO2 treatment and post-autoclave sterile anoxic additions. Complete inspected source rows define this reconstruction. Archive old flattened quantities, false LB expansions, placeholders and copied stock-solvent claims in append-only history. Unrelated annotations remain preserved, not recertified.

Composition

flowchart LR
    CultureMech_001429["rumen_bacteria_medium"]
    ing0_K2HPO4["K2HPO4"]
    CultureMech_001429 --> ing0_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing0_K2HPO4 -.-> CHEBI_131527
    ing1_Trypticase_peptone__BD_BBL_["Trypticase peptone (BD BBL)"]
    CultureMech_001429 --> ing1_Trypticase_peptone__BD_BBL_
    ing2_Yeast_extract__OXOID_["Yeast extract (OXOID)"]
    CultureMech_001429 --> ing2_Yeast_extract__OXOID_
    ing3_Glycerol["Glycerol"]
    CultureMech_001429 --> ing3_Glycerol
    CHEBI_17754["CHEBI:17754"]
    ing3_Glycerol -.-> CHEBI_17754
    ing4_Sodium_resazurin__0_1__w_v_["Sodium resazurin (0.1% w/v)"]
    CultureMech_001429 --> ing4_Sodium_resazurin__0_1__w_v_
    ing5_Na2CO3["Na2CO3"]
    CultureMech_001429 --> ing5_Na2CO3
    CHEBI_29377["CHEBI:29377"]
    ing5_Na2CO3 -.-> CHEBI_29377
    ing6_D_Glucose["D-Glucose"]
    CultureMech_001429 --> ing6_D_Glucose
    CHEBI_17634["CHEBI:17634"]
    ing6_D_Glucose -.-> CHEBI_17634
    ing7_Maltose["Maltose"]
    CultureMech_001429 --> ing7_Maltose
    CHEBI_17306["CHEBI:17306"]
    ing7_Maltose -.-> CHEBI_17306
    ing8_Cellobiose["Cellobiose"]
    CultureMech_001429 --> ing8_Cellobiose
    CHEBI_17057["CHEBI:17057"]
    ing8_Cellobiose -.-> CHEBI_17057
    ing9_Starch__soluble["Starch, soluble"]
    CultureMech_001429 --> ing9_Starch__soluble
    CHEBI_28017["CHEBI:28017"]
    ing9_Starch__soluble -.-> CHEBI_28017
    ing10_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
    CultureMech_001429 --> ing10_L_Cysteine_HCl_x_H2O
    CHEBI_91248["CHEBI:91248"]
    ing10_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248
    ing11_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_001429 --> ing11_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing11_Na2S_x_9_H2O -.-> CHEBI_76209
    ing12_Distilled_water["Distilled water"]
    CultureMech_001429 --> ing12_Distilled_water

Ingredients (13)

# Ingredient Concentration Ontology Notes
1 K2HPO4
HO4P.2K 174.174 g/mol
0.299103 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
Original main formulation input: 0.30 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 0.30 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
2 Trypticase peptone (BD BBL) 1.99402 G_PER_L Original main formulation input: 2.00 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 2.00 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
3 Yeast extract (OXOID) 0.498504 G_PER_L Original main formulation input: 0.50 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 0.50 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
4 Glycerol
C3H8O3 92.094 g/mol
0.498504 G_PER_L CHEBI:17754
glycerol
Original main formulation input: 0.50 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 0.50 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
5 Sodium resazurin (0.1% w/v) 0.0005 L Original main formulation input: 0.50 ml per preparation. Source input only; not final volume or volume percentage
6 Na2CO3
CO3.2Na 105.988 g/mol
3.98804 G_PER_L CHEBI:29377
sodium carbonate
Original main formulation input: 4.00 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 4.00 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
7 D-Glucose
C6H12O6 180.156 g/mol
0.498504 G_PER_L CHEBI:17634
D-glucose
Original main formulation input: 0.50 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 0.50 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
8 Maltose
C12H22O11 342.297 g/mol
0.498504 G_PER_L CHEBI:17306
maltose
Original main formulation input: 0.50 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 0.50 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
9 Cellobiose
C12H22O11 342.297 g/mol
0.498504 G_PER_L CHEBI:17057
cellobiose
Original main formulation input: 0.50 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 0.50 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
10 Starch, soluble 0.498504 G_PER_L CHEBI:28017
starch
(soluble) Original main formulation input: 0.50 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 0.50 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
11 L-Cysteine HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
0.249252 G_PER_L CHEBI:91248
L-cysteine hydrochloride hydrate
Original main formulation input: 0.25 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 0.25 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
12 Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
0.249252 G_PER_L CHEBI:76209
sodium sulfide nonahydrate
Original main formulation input: 0.25 g per preparation. Mass divided by the source-stated 1003 ml = 1.003 L, rounded to six significant digits; this is nominal source-based arithmetic, not measured precision. Do not sum input volumes to replace this stated denominator. Calculation: 0.25 g / 1.003 L. Additional exact excerpt (page 1 header): Final volume: 1003 ml
13 Distilled water 0.96 L Original main formulation input: 960.00 ml per preparation. Source input only; not final volume or volume percentage

Preparation

  1. Dissolve ingredients (except carbonate, glucose, maltose, cellobiose, soluble starch, cysteine and sulfide), then sparge medium with 100% CO2 gas for 30 - 45 min to make it anoxic. Add the carbonate and equilibrate the medium with the CO2 gas to pH 6.8. Distribute under 100% CO2 gas atmosphere into anoxic Hungate-type tubes or serum vials and autoclave. Thereafter, add glucose, maltose, cellobiose, soluble starch, cysteine and sulfide from sterile anoxic stock solutions prepared under 100% N2 gas atmosphere. Adjust pH of complete medium to 6.7 - 6.8, if necessary.
  2. Dissolve 50 mg haemin in 1 ml 1 N NaOH; make up to 100 ml with distilled water and filter sterilize. Store refrigerated.

Solutions

Mineral solution

Dose: 0.038 L

Stock composition
IngredientConcentrationNotes
KH2PO4 Original mineral stock input: 6.00 g per preparation. Keep literal source mass and preparation stage in evidenced notes; no assumed receiving-medium denominator
NaCl Original mineral stock input: 12.00 g per preparation. Keep literal source mass and preparation stage in evidenced notes; no assumed receiving-medium denominator
(NH4)2SO4 Original mineral stock input: 6.00 g per preparation. Keep literal source mass and preparation stage in evidenced notes; no assumed receiving-medium denominator
CaCl2 x 2 H2O Original mineral stock input: 1.60 g per preparation. Keep literal source mass and preparation stage in evidenced notes; no assumed receiving-medium denominator
MgSO4 x 7 H2O Original mineral stock input: 2.50 g per preparation. Keep literal source mass and preparation stage in evidenced notes; no assumed receiving-medium denominator
Distilled water 1.00 L Original mineral stock input: 1000.00 ml per preparation. Source input only; not final volume or volume percentage
Original main formulation input: 38.00 ml per preparation. Source input only; not final volume or volume percentage

Volatile fatty acid mixture

Dose: 0.0031 L

Stock composition
IngredientConcentrationNotes
Acetic acid 0.5485 L Original fatty-acid stock input: 548.50 ml per preparation. Source input only; not final volume or volume percentage
Propionic acid 0.1935 L Original fatty-acid stock input: 193.50 ml per preparation. Source input only; not final volume or volume percentage
Butyric acid 0.129 L Original fatty-acid stock input: 129.00 ml per preparation. Source input only; not final volume or volume percentage
n-Valeric acid 0.03225 L Original fatty-acid stock input: 32.25 ml per preparation. Source input only; not final volume or volume percentage
iso-Butyric acid 0.03225 L Original fatty-acid stock input: 32.25 ml per preparation. Source input only; not final volume or volume percentage
DL-2-Methylbutyric acid 0.03225 L Original fatty-acid stock input: 32.25 ml per preparation. Source input only; not final volume or volume percentage
iso-Valeric acid 0.03225 L Original fatty-acid stock input: 32.25 ml per preparation. Source input only; not final volume or volume percentage
Original main formulation input: 3.10 ml per preparation. Source input only; not final volume or volume percentage

Haemin solution (0.05% w/v)

Dose: 0.002 L

Stock composition
IngredientConcentrationNotes
Haemin 0.5 G_PER_L Original haemin stock input: 50.00 mg per preparation. 50 mg / 1000 mg per g / 0.1 L = 0.5 g/L within the haemin stock only. Additional exact excerpt (page 2 haemin stock preparation): make up to 100 ml with distilled water and filter
NaOH (1 N) 0.001 L Original haemin stock input: 1.00 ml per preparation. Source input only; not final volume or volume percentage
Distilled water Original haemin stock input: 100.00 ml per preparation. Make up stock to 100 ml total; do not assert another 100 ml of water. Additional exact excerpt (page 2 haemin stock preparation): make up to 100 ml with distilled water and filter
Original main formulation input: 2.00 ml per preparation. Source input only; not final volume or volume percentage

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-06-14T05:58:58.561437+00:00 idnf-grounding-fix-v1.0 Fixed ID_NOT_FOUND term groundings Absent/obsolete CHEBI term ids fixed - 1 re-grounded to the correct CHEBI, 0 de-grounded (mixture or unverifiable).
2026-01-26T17:53:10.815161Z mediadive-import Imported from MediaDive Source: DSMZ, ID: 330
2026-03-13T06:19:04.094742Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:001429
2026-03-17T06:30:23.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:16.083237+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "RUMEN BACTERIA MEDIUM" to "rumen_bacteria_medium" for consistent matching
2026-05-20T06:02:04.441355+00:00 migrate_ph_range.py MIGRATED_PH_RANGE ph_range '6.7-6.8' -> {'min': 6.7, 'max': 6.8}
2026-06-05T07:41:44.781690+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 21 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:47:11.120904+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-10-09T08:40:02.418657+00:00 codex RESTORED_RUMEN_BACTERIA_SOURCE_FORMULATIONS_WITH_EVIDENCE Restore source-specific medium330 ingredients, stock scopes and input units with literal evidence. Preserve prior supported entries, provider nulls, unknown original bases and the JCM1029 access gap. No growth association added.