amoebobacter_medium

CultureMech:001527 bacterial COMPLEX LIQUID
Original name: AMOEBOBACTER MEDIUM

Overview

External ontology
mediadive.medium:422 (source link unavailable) — AMOEBOBACTER MEDIUM
Applications
  • Microbial cultivation
Notes
Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium422.pdf

Composition

flowchart LR
    CultureMech_001527["amoebobacter_medium"]
    ing0_Acetate["Acetate"]
    CultureMech_001527 --> ing0_Acetate
    CHEBI_30089["CHEBI:30089"]
    ing0_Acetate -.-> CHEBI_30089
    ing1_Thiosulfate["Thiosulfate"]
    CultureMech_001527 --> ing1_Thiosulfate
    CHEBI_26977["CHEBI:26977"]
    ing1_Thiosulfate -.-> CHEBI_26977
    ing2_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_001527 --> ing2_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing2_Na2S_x_9_H2O -.-> CHEBI_76209

Ingredients (3)

# Ingredient Concentration Ontology Notes
1 Acetate
C2H3O2 59.044 g/mol
0.118088 G_PER_L CHEBI:30089
acetate
2 Thiosulfate 1 MILLIMOLAR CHEBI:26977
thiosulfate
3 Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
30 G_PER_L CHEBI:76209
sodium sulfide nonahydrate

Preparation

  1. Supplement medium 28 with 2 mmol acetate and 1 mmol thiosulfate.
  2. Adjust the pH with filter-sterilised 1M Na2CO3 to 7.1-7.3.
  3. If needed, aliquot into sterile, N<sub>2</sub> gassed screw-cap tubes under N<sub>2</sub> gas.
  4. During the first 24 h, the iron of the medium precipitates in the form of black flocks. No other sediment should arise in the otherwise clear medium.
  5. Aliquot Solution A into 100 mL screw-cap bottles, filled with 46 mL each. Bubble with N2/CO2 and autoclave at 121°C for 15 min (as decribed below).
  6. Prepare the following solutions (resazurin, bicarbonate and Pfennig's heterotrophic salts) and sterilize as given below.
  7. Add bicarbonate solution and Pfennig's heterotrophic salts to the resazurin (complete volumina, i.e. 50 mL bicarbonate solution and 26 mL Pfennig's heterotrophic salts solution). Bubble with CO2 in an ice bath under sterile conditions.
  8. Fill 50 ml of this mixture to each bottle of solution A (46 mL + 50 mL).
  9. Before use, add 4 ml sulfide solution (1.5%) and 0.1 ml Vitamin B12 solution to each 100 mL bottle.
  10. Feed the actively growing culture periodically with neutralized 3% solution of sodium sulfide (use 1 -3 mL/100 mL depending on strain and cultivation stage) to replenish sulfide and with other supplement solutions (see Ref. 3365).
  11. The sulfide solution is prepared in a 250 ml screw-capped bottle with a butyl rubber septum and a magnetic stirrer. The solution is bubbled with nitrogen gas, closed and autoclaved for 15 min. at 121°C. After cooling to room temperature the pH is adjusted to about 7.0 by adding of sterile 2 M H2SO4 drop-wise with a syringe without opening the bottle.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-26T17:53:11.093269Z mediadive-import Imported from MediaDive Source: DSMZ, ID: 422
2026-03-13T06:19:04.979348Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:001527
2026-03-17T06:30:29.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:17.060086+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "AMOEBOBACTER MEDIUM" to "amoebobacter_medium" for consistent matching
2026-06-05T07:40:48.624119+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.