Overview
- External ontology
- mediadive.medium:46 (source link unavailable) — PFENNIG'S MEDIUM I WITH SALT
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.1, 'max': 7.3}
- Notes
- Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium46.pdf
Composition
flowchart LR
CultureMech_001599["pfennigs_medium_i_with_salt"]
ing0_NaCl["NaCl"]
CultureMech_001599 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_001599 --> ing1_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing1_CaCl2_x_2_H2O -.-> CHEBI_86158
ing2_Yeast_extract["Yeast extract"]
CultureMech_001599 --> ing2_Yeast_extract
ing3_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_001599 --> ing3_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing3_Na2S_x_9_H2O -.-> CHEBI_76209
ing4_NaHCO3["NaHCO3"]
CultureMech_001599 --> ing4_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing4_NaHCO3 -.-> CHEBI_32139
ing5_Resazurin["Resazurin"]
CultureMech_001599 --> ing5_Resazurin
CHEBI_8806["CHEBI:8806"]
ing5_Resazurin -.-> CHEBI_8806
ing6_Ammonium_chloride["Ammonium chloride"]
CultureMech_001599 --> ing6_Ammonium_chloride
CHEBI_31206["CHEBI:31206"]
ing6_Ammonium_chloride -.-> CHEBI_31206
ing7_Ammonium_acetate["Ammonium acetate"]
CultureMech_001599 --> ing7_Ammonium_acetate
CHEBI_62947["CHEBI:62947"]
ing7_Ammonium_acetate -.-> CHEBI_62947
ing8_Pyruvic_acid_sodium_salt["Pyruvic acid sodium salt"]
CultureMech_001599 --> ing8_Pyruvic_acid_sodium_salt
CHEBI_50144["CHEBI:50144"]
ing8_Pyruvic_acid_sodium_salt -.-> CHEBI_50144
ing9_Dextrose["Dextrose"]
CultureMech_001599 --> ing9_Dextrose
CHEBI_17634["CHEBI:17634"]
ing9_Dextrose -.-> CHEBI_17634
ing10_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_001599 --> ing10_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing10_MgSO4_x_7_H2O -.-> CHEBI_31795
ing11_KCl["KCl"]
CultureMech_001599 --> ing11_KCl
CHEBI_32588["CHEBI:32588"]
ing11_KCl -.-> CHEBI_32588
ing12_KH2PO4["KH2PO4"]
CultureMech_001599 --> ing12_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing12_KH2PO4 -.-> CHEBI_63036
ing13_Vitamin_B12["Vitamin B12"]
CultureMech_001599 --> ing13_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing13_Vitamin_B12 -.-> CHEBI_176843
Ingredients (14)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
10 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 2 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.543478 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 3 | Yeast extract | 0.543478 G_PER_L | ||
| 4 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
44.8148 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
[Merged 2 duplicates: 14.8148, 30.0] |
| 5 |
NaHCO3
CHO3.Na 84.006 g/mol
|
30 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 6 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.0111111 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 7 |
Ammonium chloride
Cl.H4N 53.492 g/mol
|
13.4615 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 8 |
Ammonium acetate
C2H3O2.H4N 77.083 g/mol
|
9.61539 G_PER_L |
CHEBI:62947
ammonium acetate
|
|
| 9 |
Pyruvic acid sodium salt
C3H3O3.Na 110.044 g/mol
|
9.61539 G_PER_L |
CHEBI:50144
sodium pyruvate
|
|
| 10 |
Dextrose
C6H12O6 180.156 g/mol
|
9.61539 G_PER_L |
CHEBI:17634
D-glucose
|
|
| 11 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
19.2308 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 12 |
KCl
Cl.K 74.551 g/mol
|
13.4615 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 13 |
KH2PO4
H2O4P.K 136.084 g/mol
|
13.4615 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 14 | Vitamin B12 | 0.1 G_PER_L |
CHEBI:176843
vitamin B12
|
Preparation
- Adjust the pH with filter-sterilised 1M Na2CO3 to 7.1-7.3.
- If needed, aliquot into sterile, N<sub>2</sub> gassed screw-cap tubes under N<sub>2</sub> gas.
- During the first 24 h, the iron of the medium precipitates in the form of black flocks. No other sediment should arise in the otherwise clear medium.
- Aliquot Solution A into 100 mL screw-cap bottles, filled with 46 mL each. Bubble with N2/CO2 and autoclave at 121°C for 15 min (as decribed below).
- Prepare the following solutions (resazurin, bicarbonate and Pfennig's heterotrophic salts) and sterilize as given below.
- Add bicarbonate solution and Pfennig's heterotrophic salts to the resazurin (complete volumina, i.e. 50 mL bicarbonate solution and 26 mL Pfennig's heterotrophic salts solution). Bubble with CO2 in an ice bath under sterile conditions.
- Fill 50 ml of this mixture to each bottle of solution A (46 mL + 50 mL).
- Before use, add 4 ml sulfide solution (1.5%) and 0.1 ml Vitamin B12 solution to each 100 mL bottle.
- Feed the actively growing culture periodically with neutralized 3% solution of sodium sulfide (use 1 -3 mL/100 mL depending on strain and cultivation stage) to replenish sulfide and with other supplement solutions (see Ref. 3365).
- Aliquot Solution A into 100 mL screw-cap bottles, filled with 46 mL each. Bubble with N2/CO2 and autoclave at 121°C for 15 min.
- Prepare in a screw-cap bottle, bubble with N2 to replace air, close tightly and autoclave.
- Bubble with CO2 and filter sterilize into sterile, gas-tight, 100 ml screw-cap bottle.
- Autoclave in a cotton-stoppered Erlenmeyer flask with an outlet tube for medium, connected to a glass outlet at the bottom of the vessel and has, at the other end, a silicon rubber tube with a pinch cock and a bell for aseptic dispensing of the medium into bottles.
- Cool to room temperature under an atmosphere of N2/CO2 in an ice bath.
- Filter sterilize into sterile, gas-tight, 100 ml screw-cap bottle.
- Filter sterilized
- The sulfide solution is prepared in a 250 ml screw-capped bottle with a butyl rubber septum and a magnetic stirrer. The solution is bubbled with nitrogen gas, closed and autoclaved for 15 min. at 121°C. After cooling to room temperature the pH is adjusted to about 7.0 by adding of sterile 2 M H2SO4 drop-wise with a syringe without opening the bottle.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:10.041727Z | mediadive-import | Imported from MediaDive | Source: DSMZ, ID: 46 |
| 2026-03-13T03:09:32.777383Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:19:05.541883Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:001599 |
| 2026-03-17T06:30:43.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:17.671805+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "PFENNIG'S MEDIUM I WITH SALT" to "pfennigs_medium_i_with_salt" for consistent matching |
| 2026-05-20T06:00:47.143506+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '7.1-7.3' -> {'min': 7.1, 'max': 7.3} |
| 2026-06-05T07:40:16.151832+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 12 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:42.634501+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |