chopped_meat_medium_for_treponema_sp

CultureMech:001927 bacterial COMPLEX SOLID_AGAR
Original name: CHOPPED MEAT MEDIUM FOR TREPONEMA SP.

Overview

External ontology
mediadive.medium:78a (source link unavailable) — CHOPPED MEAT MEDIUM FOR TREPONEMA SP.
Applications
  • Microbial cultivation
Notes
Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium78a.pdf

Composition

flowchart LR
    CultureMech_001927["chopped_meat_medium_for_treponema_sp"]
    ing0_L_Histidine["L-Histidine"]
    CultureMech_001927 --> ing0_L_Histidine
    CHEBI_15971["CHEBI:15971"]
    ing0_L_Histidine -.-> CHEBI_15971
    ing1_L_Serine["L-Serine"]
    CultureMech_001927 --> ing1_L_Serine
    CHEBI_17115["CHEBI:17115"]
    ing1_L_Serine -.-> CHEBI_17115
    ing2_L_Glutamine["L-Glutamine"]
    CultureMech_001927 --> ing2_L_Glutamine
    CHEBI_18050["CHEBI:18050"]
    ing2_L_Glutamine -.-> CHEBI_18050
    ing3_Vitamin_B12["Vitamin B12"]
    CultureMech_001927 --> ing3_Vitamin_B12
    CHEBI_176843["CHEBI:176843"]
    ing3_Vitamin_B12 -.-> CHEBI_176843
    ing4_Pantothenic_acid["Pantothenic acid"]
    CultureMech_001927 --> ing4_Pantothenic_acid
    CHEBI_7916["CHEBI:7916"]
    ing4_Pantothenic_acid -.-> CHEBI_7916
    ing5_Riboflavin["Riboflavin"]
    CultureMech_001927 --> ing5_Riboflavin
    CHEBI_17015["CHEBI:17015"]
    ing5_Riboflavin -.-> CHEBI_17015
    ing6_Pyridoxamine_hydrochloride["Pyridoxamine hydrochloride"]
    CultureMech_001927 --> ing6_Pyridoxamine_hydrochloride
    CHEBI_131531["CHEBI:131531"]
    ing6_Pyridoxamine_hydrochloride -.-> CHEBI_131531
    ing7_Biotin["Biotin"]
    CultureMech_001927 --> ing7_Biotin
    CHEBI_15956["CHEBI:15956"]
    ing7_Biotin -.-> CHEBI_15956
    ing8_Folic_acid["Folic acid"]
    CultureMech_001927 --> ing8_Folic_acid
    CHEBI_27470["CHEBI:27470"]
    ing8_Folic_acid -.-> CHEBI_27470
    ing9_Nicotinic_acid["Nicotinic acid"]
    CultureMech_001927 --> ing9_Nicotinic_acid
    CHEBI_15940["CHEBI:15940"]
    ing9_Nicotinic_acid -.-> CHEBI_15940
    ing10_Nicotine_amide["Nicotine amide"]
    CultureMech_001927 --> ing10_Nicotine_amide
    CHEBI_17154["CHEBI:17154"]
    ing10_Nicotine_amide -.-> CHEBI_17154
    ing11_alpha_lipoic_acid["alpha-lipoic acid"]
    CultureMech_001927 --> ing11_alpha_lipoic_acid
    CHEBI_16494["CHEBI:16494"]
    ing11_alpha_lipoic_acid -.-> CHEBI_16494
    ing12_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
    CultureMech_001927 --> ing12_p_Aminobenzoic_acid
    CHEBI_30753["CHEBI:30753"]
    ing12_p_Aminobenzoic_acid -.-> CHEBI_30753
    ing13_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
    CultureMech_001927 --> ing13_Thiamine_HCl_x_2_H2O
    CHEBI_132751["CHEBI:132751"]
    ing13_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
    ing14_Ground_beef["Ground beef"]
    CultureMech_001927 --> ing14_Ground_beef
    ing15_NaOH["NaOH"]
    CultureMech_001927 --> ing15_NaOH
    CHEBI_32145["CHEBI:32145"]
    ing15_NaOH -.-> CHEBI_32145
    ing16_Casitone["Casitone"]
    CultureMech_001927 --> ing16_Casitone
    ing17_Yeast_extract["Yeast extract"]
    CultureMech_001927 --> ing17_Yeast_extract
    ing18_K2HPO4["K2HPO4"]
    CultureMech_001927 --> ing18_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing18_K2HPO4 -.-> CHEBI_131527
    ing19_Resazurin["Resazurin"]
    CultureMech_001927 --> ing19_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing19_Resazurin -.-> CHEBI_8806
    ing20_L_Cysteine_HCl["L-Cysteine HCl"]
    CultureMech_001927 --> ing20_L_Cysteine_HCl
    CHEBI_91247["CHEBI:91247"]
    ing20_L_Cysteine_HCl -.-> CHEBI_91247
    ing21_Agar["Agar"]
    CultureMech_001927 --> ing21_Agar
    CHEBI_2509["CHEBI:2509"]
    ing21_Agar -.-> CHEBI_2509
    ing22_Haemin["Haemin"]
    CultureMech_001927 --> ing22_Haemin
    CHEBI_50385["CHEBI:50385"]
    ing22_Haemin -.-> CHEBI_50385
    ing23_Vitamin_K3["Vitamin K3"]
    CultureMech_001927 --> ing23_Vitamin_K3
    CHEBI_28869["CHEBI:28869"]
    ing23_Vitamin_K3 -.-> CHEBI_28869
    ing24_Ethanol["Ethanol"]
    CultureMech_001927 --> ing24_Ethanol
    CHEBI_16236["CHEBI:16236"]
    ing24_Ethanol -.-> CHEBI_16236
    ing25_Vitamin_K1["Vitamin K1"]
    CultureMech_001927 --> ing25_Vitamin_K1
    CHEBI_18067["CHEBI:18067"]
    ing25_Vitamin_K1 -.-> CHEBI_18067

Ingredients (26)

# Ingredient Concentration Ontology Notes
1 L-Histidine
C6H9N3O2 155.157 g/mol
12 G_PER_L CHEBI:15971
L-histidine
2 L-Serine
C3H7NO3 105.093 g/mol
10 G_PER_L CHEBI:17115
L-serine
3 L-Glutamine
C5H10N2O3 146.146 g/mol
14 G_PER_L CHEBI:18050
L-glutamine
4 Vitamin B12 0.05 G_PER_L CHEBI:176843
vitamin B12
5 Pantothenic acid
C9H17NO5 219.237 g/mol
0.05 G_PER_L CHEBI:7916
pantothenic acid
6 Riboflavin
C17H20N4O6 376.369 g/mol
0.05 G_PER_L CHEBI:17015
riboflavin
7 Pyridoxamine hydrochloride
C8H12N2O2.HCl 204.657 g/mol
0.01 G_PER_L CHEBI:131531
pyridoxamine hydrochloride
8 Biotin
C10H16N2O3S 244.316 g/mol
0.02 G_PER_L CHEBI:15956
biotin
9 Folic acid
C19H19N7O6 441.404 g/mol
0.02 G_PER_L CHEBI:27470
folic acid
10 Nicotinic acid
C6H5NO2 123.111 g/mol
0.025 G_PER_L CHEBI:15940
nicotinic acid
11 Nicotine amide
C6H6N2O 122.127 g/mol
0.025 G_PER_L CHEBI:17154
nicotinamide
12 alpha-lipoic acid
C8H14O2S2 206.332 g/mol
0.05 G_PER_L CHEBI:16494
lipoic acid
13 p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
0.05 G_PER_L CHEBI:30753
4-aminobenzoic acid
14 Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
0.05 G_PER_L CHEBI:132751
thiamine hydrochloride dihydrate
15 Ground beef 487.805 G_PER_L
16 NaOH
HO.Na 39.997 g/mol
26.0 G_PER_L CHEBI:32145
sodium hydroxide
[Merged 2 duplicates: 25.0, 1.0]
17 Casitone 29.2683 G_PER_L
18 Yeast extract 4.87805 G_PER_L
19 K2HPO4
HO4P.2K 174.174 g/mol
4.87805 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
20 Resazurin
C12H7NO4 229.191 g/mol
0.00097561 G_PER_L CHEBI:8806
Resazurin
21 L-Cysteine HCl
C3H7NO2S.HCl 157.622 g/mol
0.487805 G_PER_L CHEBI:91247
L-cysteine hydrochloride
22 Agar 14.6341 G_PER_L CHEBI:2509
agar
(for solid medium)
23 Haemin
C34H32ClFeN4O4 651.952 g/mol
0.5 G_PER_L CHEBI:50385
hemin
24 Vitamin K3
C11H8O2 172.183 g/mol
0.05 G_PER_L CHEBI:28869
menadione
25 Ethanol
C2H6O 46.069 g/mol
959.5 G_PER_L CHEBI:16236
ethanol
[Merged 2 duplicates: 9.5, 950.0]
26 Vitamin K1
C31H46O2 450.707 g/mol
0.1 G_PER_L CHEBI:18067
phylloquinone

Preparation

  1. To the ready medium, add 50 ml/l amino acid solution and 5 ml/l vitamin solution. These solutions must not be prepared under anaerobic conditions.
  2. Stir for some hours, filter sterilize the solution.
  3. To make medium anoxic bring it to a boil, cool under 100% N2 gas atmosphere, add 0.5 g/l L-cysteine hydrochloride and adjust pH to 7.0. Dispense under 100% N2 gas atmosphere by filling 7 ml medium into anoxic Hungate-type tubes (for strains demanding meat particles put those first into the tube (use 1 part meat particles to 4 or 5 parts fluid)). Autoclave at 121°C for 30 min. For agar slants use 15.0 g agar per 1000.0 ml medium.
  4. In some cases (as indicated in the catalogue) the addition of Haemin and Vitamin K1 or Vitamin K3 is necessary. Add to 1000 ml of medium after autoclaving:
  5. Use lean beef or horse meat. Remove fat and connective tissue before grinding. Mix meat, water and NaOH, then boil for 15 min with stirring. Cool to room temperature, skim fat off surface, and filter, retaining both meat particles and filtrate. To the filtrate add water to a final volume of 1000 ml, and then add:
  6. Dissolve 50 mg haemin in 1 ml 1 N NaOH; make up to 100 ml with distilled water and filter sterilize. Store refrigerated.
  7. Dissolve 5 mg vitamin K3 in 1 ml 95% ethanol, dilute to 0.05 mg/ml in water and filter sterilize. Store refrigerated in a brown bottle.
  8. Dissolve 0.1 ml of vitamin K1 in 20 ml 95% ethanol and filter sterilize. Store refrigerated in a brown bottle.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-26T17:53:10.098782Z mediadive-import Imported from MediaDive Source: DSMZ, ID: 78a
2026-03-13T03:09:27.338504Z data-quality-cleanup-v1.0 Data quality fixes Merged 2 duplicate ingredient(s)
2026-03-13T06:19:08.488293Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:001927
2026-03-17T06:30:36.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:20.938183+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "CHOPPED MEAT MEDIUM FOR TREPONEMA SP." to "chopped_meat_medium_for_treponema_sp" for consistent matching
2026-06-05T07:40:53.515992+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 20 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:54.546142+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.