Overview
- External ontology
- mediadive.medium:78a (source link unavailable) — CHOPPED MEAT MEDIUM FOR TREPONEMA SP.
- Applications
-
- Microbial cultivation
- Notes
- Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium78a.pdf
Composition
flowchart LR
CultureMech_001927["chopped_meat_medium_for_treponema_sp"]
ing0_L_Histidine["L-Histidine"]
CultureMech_001927 --> ing0_L_Histidine
CHEBI_15971["CHEBI:15971"]
ing0_L_Histidine -.-> CHEBI_15971
ing1_L_Serine["L-Serine"]
CultureMech_001927 --> ing1_L_Serine
CHEBI_17115["CHEBI:17115"]
ing1_L_Serine -.-> CHEBI_17115
ing2_L_Glutamine["L-Glutamine"]
CultureMech_001927 --> ing2_L_Glutamine
CHEBI_18050["CHEBI:18050"]
ing2_L_Glutamine -.-> CHEBI_18050
ing3_Vitamin_B12["Vitamin B12"]
CultureMech_001927 --> ing3_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing3_Vitamin_B12 -.-> CHEBI_176843
ing4_Pantothenic_acid["Pantothenic acid"]
CultureMech_001927 --> ing4_Pantothenic_acid
CHEBI_7916["CHEBI:7916"]
ing4_Pantothenic_acid -.-> CHEBI_7916
ing5_Riboflavin["Riboflavin"]
CultureMech_001927 --> ing5_Riboflavin
CHEBI_17015["CHEBI:17015"]
ing5_Riboflavin -.-> CHEBI_17015
ing6_Pyridoxamine_hydrochloride["Pyridoxamine hydrochloride"]
CultureMech_001927 --> ing6_Pyridoxamine_hydrochloride
CHEBI_131531["CHEBI:131531"]
ing6_Pyridoxamine_hydrochloride -.-> CHEBI_131531
ing7_Biotin["Biotin"]
CultureMech_001927 --> ing7_Biotin
CHEBI_15956["CHEBI:15956"]
ing7_Biotin -.-> CHEBI_15956
ing8_Folic_acid["Folic acid"]
CultureMech_001927 --> ing8_Folic_acid
CHEBI_27470["CHEBI:27470"]
ing8_Folic_acid -.-> CHEBI_27470
ing9_Nicotinic_acid["Nicotinic acid"]
CultureMech_001927 --> ing9_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing9_Nicotinic_acid -.-> CHEBI_15940
ing10_Nicotine_amide["Nicotine amide"]
CultureMech_001927 --> ing10_Nicotine_amide
CHEBI_17154["CHEBI:17154"]
ing10_Nicotine_amide -.-> CHEBI_17154
ing11_alpha_lipoic_acid["alpha-lipoic acid"]
CultureMech_001927 --> ing11_alpha_lipoic_acid
CHEBI_16494["CHEBI:16494"]
ing11_alpha_lipoic_acid -.-> CHEBI_16494
ing12_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
CultureMech_001927 --> ing12_p_Aminobenzoic_acid
CHEBI_30753["CHEBI:30753"]
ing12_p_Aminobenzoic_acid -.-> CHEBI_30753
ing13_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
CultureMech_001927 --> ing13_Thiamine_HCl_x_2_H2O
CHEBI_132751["CHEBI:132751"]
ing13_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
ing14_Ground_beef["Ground beef"]
CultureMech_001927 --> ing14_Ground_beef
ing15_NaOH["NaOH"]
CultureMech_001927 --> ing15_NaOH
CHEBI_32145["CHEBI:32145"]
ing15_NaOH -.-> CHEBI_32145
ing16_Casitone["Casitone"]
CultureMech_001927 --> ing16_Casitone
ing17_Yeast_extract["Yeast extract"]
CultureMech_001927 --> ing17_Yeast_extract
ing18_K2HPO4["K2HPO4"]
CultureMech_001927 --> ing18_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing18_K2HPO4 -.-> CHEBI_131527
ing19_Resazurin["Resazurin"]
CultureMech_001927 --> ing19_Resazurin
CHEBI_8806["CHEBI:8806"]
ing19_Resazurin -.-> CHEBI_8806
ing20_L_Cysteine_HCl["L-Cysteine HCl"]
CultureMech_001927 --> ing20_L_Cysteine_HCl
CHEBI_91247["CHEBI:91247"]
ing20_L_Cysteine_HCl -.-> CHEBI_91247
ing21_Agar["Agar"]
CultureMech_001927 --> ing21_Agar
CHEBI_2509["CHEBI:2509"]
ing21_Agar -.-> CHEBI_2509
ing22_Haemin["Haemin"]
CultureMech_001927 --> ing22_Haemin
CHEBI_50385["CHEBI:50385"]
ing22_Haemin -.-> CHEBI_50385
ing23_Vitamin_K3["Vitamin K3"]
CultureMech_001927 --> ing23_Vitamin_K3
CHEBI_28869["CHEBI:28869"]
ing23_Vitamin_K3 -.-> CHEBI_28869
ing24_Ethanol["Ethanol"]
CultureMech_001927 --> ing24_Ethanol
CHEBI_16236["CHEBI:16236"]
ing24_Ethanol -.-> CHEBI_16236
ing25_Vitamin_K1["Vitamin K1"]
CultureMech_001927 --> ing25_Vitamin_K1
CHEBI_18067["CHEBI:18067"]
ing25_Vitamin_K1 -.-> CHEBI_18067
Ingredients (26)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
L-Histidine
C6H9N3O2 155.157 g/mol
|
12 G_PER_L |
CHEBI:15971
L-histidine
|
|
| 2 |
L-Serine
C3H7NO3 105.093 g/mol
|
10 G_PER_L |
CHEBI:17115
L-serine
|
|
| 3 |
L-Glutamine
C5H10N2O3 146.146 g/mol
|
14 G_PER_L |
CHEBI:18050
L-glutamine
|
|
| 4 | Vitamin B12 | 0.05 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 5 |
Pantothenic acid
C9H17NO5 219.237 g/mol
|
0.05 G_PER_L |
CHEBI:7916
pantothenic acid
|
|
| 6 |
Riboflavin
C17H20N4O6 376.369 g/mol
|
0.05 G_PER_L |
CHEBI:17015
riboflavin
|
|
| 7 |
Pyridoxamine hydrochloride
C8H12N2O2.HCl 204.657 g/mol
|
0.01 G_PER_L |
CHEBI:131531
pyridoxamine hydrochloride
|
|
| 8 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.02 G_PER_L |
CHEBI:15956
biotin
|
|
| 9 |
Folic acid
C19H19N7O6 441.404 g/mol
|
0.02 G_PER_L |
CHEBI:27470
folic acid
|
|
| 10 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
0.025 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 11 |
Nicotine amide
C6H6N2O 122.127 g/mol
|
0.025 G_PER_L |
CHEBI:17154
nicotinamide
|
|
| 12 |
alpha-lipoic acid
C8H14O2S2 206.332 g/mol
|
0.05 G_PER_L |
CHEBI:16494
lipoic acid
|
|
| 13 |
p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
|
0.05 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
|
| 14 |
Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
|
0.05 G_PER_L |
CHEBI:132751
thiamine hydrochloride dihydrate
|
|
| 15 | Ground beef | 487.805 G_PER_L | ||
| 16 |
NaOH
HO.Na 39.997 g/mol
|
26.0 G_PER_L |
CHEBI:32145
sodium hydroxide
|
[Merged 2 duplicates: 25.0, 1.0] |
| 17 | Casitone | 29.2683 G_PER_L | ||
| 18 | Yeast extract | 4.87805 G_PER_L | ||
| 19 |
K2HPO4
HO4P.2K 174.174 g/mol
|
4.87805 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 20 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.00097561 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 21 |
L-Cysteine HCl
C3H7NO2S.HCl 157.622 g/mol
|
0.487805 G_PER_L |
CHEBI:91247
L-cysteine hydrochloride
|
|
| 22 | Agar | 14.6341 G_PER_L |
CHEBI:2509
agar
|
(for solid medium) |
| 23 |
Haemin
C34H32ClFeN4O4 651.952 g/mol
|
0.5 G_PER_L |
CHEBI:50385
hemin
|
|
| 24 |
Vitamin K3
C11H8O2 172.183 g/mol
|
0.05 G_PER_L |
CHEBI:28869
menadione
|
|
| 25 |
Ethanol
C2H6O 46.069 g/mol
|
959.5 G_PER_L |
CHEBI:16236
ethanol
|
[Merged 2 duplicates: 9.5, 950.0] |
| 26 |
Vitamin K1
C31H46O2 450.707 g/mol
|
0.1 G_PER_L |
CHEBI:18067
phylloquinone
|
Preparation
- To the ready medium, add 50 ml/l amino acid solution and 5 ml/l vitamin solution. These solutions must not be prepared under anaerobic conditions.
- Stir for some hours, filter sterilize the solution.
- To make medium anoxic bring it to a boil, cool under 100% N2 gas atmosphere, add 0.5 g/l L-cysteine hydrochloride and adjust pH to 7.0. Dispense under 100% N2 gas atmosphere by filling 7 ml medium into anoxic Hungate-type tubes (for strains demanding meat particles put those first into the tube (use 1 part meat particles to 4 or 5 parts fluid)). Autoclave at 121°C for 30 min. For agar slants use 15.0 g agar per 1000.0 ml medium.
- In some cases (as indicated in the catalogue) the addition of Haemin and Vitamin K1 or Vitamin K3 is necessary. Add to 1000 ml of medium after autoclaving:
- Use lean beef or horse meat. Remove fat and connective tissue before grinding. Mix meat, water and NaOH, then boil for 15 min with stirring. Cool to room temperature, skim fat off surface, and filter, retaining both meat particles and filtrate. To the filtrate add water to a final volume of 1000 ml, and then add:
- Dissolve 50 mg haemin in 1 ml 1 N NaOH; make up to 100 ml with distilled water and filter sterilize. Store refrigerated.
- Dissolve 5 mg vitamin K3 in 1 ml 95% ethanol, dilute to 0.05 mg/ml in water and filter sterilize. Store refrigerated in a brown bottle.
- Dissolve 0.1 ml of vitamin K1 in 20 ml 95% ethanol and filter sterilize. Store refrigerated in a brown bottle.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:10.098782Z | mediadive-import | Imported from MediaDive | Source: DSMZ, ID: 78a |
| 2026-03-13T03:09:27.338504Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 2 duplicate ingredient(s) |
| 2026-03-13T06:19:08.488293Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:001927 |
| 2026-03-17T06:30:36.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:20.938183+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "CHOPPED MEAT MEDIUM FOR TREPONEMA SP." to "chopped_meat_medium_for_treponema_sp" for consistent matching |
| 2026-06-05T07:40:53.515992+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 20 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:54.546142+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |