Overview
- External ontology
- mediadive.medium:829 (source link unavailable) — DESULFUROBACTERIUM MEDIUM
- Applications
-
- Microbial cultivation
- pH
- 6.0
- Notes
- Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium829.pdf Superseded historical provenance, not a current formulation claim: Commercial Product: LB Medium (Luria-Bertani, Miller formulation) Supplier: Multiple suppliers (Difco, Sigma, etc.) Catalog: Multiple (L3522 Sigma, 244520 BD) Source: https://www.laboratorynotes.com/preparation-of-luria-bertani-lb-miller-broth/ Accessed: 2026-03-28 Constituent composition researched from product specification. The original reports final volume 1005 ml, while its listed main liquid inputs sum to 1005.5 ml. Preserve the discrepancy. Source-reported basal rates do not certify independently measured final volume; no missing makeup water is invented. Full exact-source recipe and stock/preparation tables were inspected. Reconstructed nodes retain explicit source scope; complete prior ingredient/stock assertions, including copied LB mappings and stage conflations, are archived in append-only history. A title alone is not the basis for removal. Unchanged annotations are preserved, not recertified; no new organism-growth association is added. Full exact-source recipe and stock/preparation tables were inspected. Reconstructed nodes retain explicit source scope; complete prior ingredient/stock assertions, including copied LB mappings and stage conflations, are archived in append-only history. A title alone is not the basis for removal. Unchanged annotations are preserved, not recertified; no new organism-growth association is added.
Composition
flowchart LR
CultureMech_001978["desulfurobacterium_medium"]
ing0_Sea_Salt["Sea Salt"]
CultureMech_001978 --> ing0_Sea_Salt
ing1_NH4Cl["NH4Cl"]
CultureMech_001978 --> ing1_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing1_NH4Cl -.-> CHEBI_31206
ing2_KH2PO4["KH2PO4"]
CultureMech_001978 --> ing2_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing2_KH2PO4 -.-> CHEBI_63036
ing3_MES__2__N_morpholino__ethane_sulfonic_acid_["MES [2-(N-morpholino) ethane sulfonic acid]"]
CultureMech_001978 --> ing3_MES__2__N_morpholino__ethane_sulfonic_acid_
CHEBI_39005["CHEBI:39005"]
ing3_MES__2__N_morpholino__ethane_sulfonic_acid_ -.-> CHEBI_39005
ing4_Sulfur["Sulfur"]
CultureMech_001978 --> ing4_Sulfur
CHEBI_26833["CHEBI:26833"]
ing4_Sulfur -.-> CHEBI_26833
ing5_Na2CO3["Na2CO3"]
CultureMech_001978 --> ing5_Na2CO3
CHEBI_29377["CHEBI:29377"]
ing5_Na2CO3 -.-> CHEBI_29377
ing6_Distilled_water["Distilled water"]
CultureMech_001978 --> ing6_Distilled_water
Ingredients (7)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Sea Salt | 29.8507 G_PER_L | Direct basal input 30 g / source-reported final volume 1.005 L = 29.8507 g/L, six significant digits. This is the printed denominator, not independently measured volume; the liquid-input discrepancy is retained at recipe root. Literal source attribute: SIGMA, must not show signs of caking. | |
| 2 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.995025 G_PER_L |
CHEBI:31206
ammonium chloride
|
Direct basal input 1 g / source-reported final volume 1.005 L = 0.995025 g/L, six significant digits. This is the printed denominator, not independently measured volume; the liquid-input discrepancy is retained at recipe root. |
| 3 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.348259 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Direct basal input 0.35 g / source-reported final volume 1.005 L = 0.348259 g/L, six significant digits. This is the printed denominator, not independently measured volume; the liquid-input discrepancy is retained at recipe root. |
| 4 |
MES [2-(N-morpholino) ethane sulfonic acid]
C6H13NO4S 195.24 g/mol
|
1.94030 G_PER_L |
CHEBI:39005
2-(N-morpholino)ethanesulfonic acid
|
Direct basal input 1.95 g / source-reported final volume 1.005 L = 1.94030 g/L, six significant digits. This is the printed denominator, not independently measured volume; the liquid-input discrepancy is retained at recipe root. |
| 5 |
Sulfur
S 32.067 g/mol
|
9.95025 G_PER_L |
CHEBI:26833
sulfur atom
|
(powdered) Direct basal input 10 g / source-reported final volume 1.005 L = 9.95025 g/L, six significant digits. This is the printed denominator, not independently measured volume; the liquid-input discrepancy is retained at recipe root. Literal source condition: powdered. |
| 6 |
Na2CO3
CO3.2Na 105.988 g/mol
|
0.497512 G_PER_L |
CHEBI:29377
sodium carbonate
|
Direct basal input 0.5 g / source-reported final volume 1.005 L = 0.497512 g/L, six significant digits. This is the printed denominator, not independently measured volume; the liquid-input discrepancy is retained at recipe root. |
| 7 | Distilled water | 1 L | Preparation input 1000 ml / 1000 = 1 L, not mass, volume percent or measured final volume. |
Preparation
- Dissolve ingredients (except sulfur, carbonate, vitamins, growth-stimulating factors and Na-dithionite), boil medium for 1 min, then cool to room temperature under 80% H2 and 20% CO2 gas atmosphere. Adjust pH to 6.0 and dispense under 80% H2 and 20% CO2 gas atmosphere into anoxic Hungate-type tubes or serum vials which contain already the appropriate amount of sulfur, only to 30% of their volume to allow for a large head space. Autoclave at a temperature of <b>110°C</b> for 20 min! Add vitamins and growth-stimulating factors from sterile anoxic stock solutions prepared under 100% N2 gas and carbonate and Na-dithionite from sterile anoxic stock solution prepared under 80% N2 and 20% CO2 gas atmosphere. Vitamins and Na-dithionite are sterilized by filtration. Adjust pH of the complete medium to 6.0, if necessary.
- After inoculation use 1 bar overpressure of sterile 80% H2 and 20% CO2 gas mixture.
Solutions
Trace element solution SL-10
Dose: 0.001 L
| Ingredient | Concentration | Notes |
|---|---|---|
| HCl | 0.01 L | Preparation input 10 ml / 1000 = 0.01 L, not mass, volume percent or measured final volume. Literal source attribute: 25%. The 25% carrier lacks an explicit percentage basis; no density or gram conversion is asserted. |
| FeCl2 x 4 H2O | 1.5 G_PER_L | SL-10 input 1.5 g = 1.5 g / explicit made-up stock volume 1 L. This stock rate is not a receiving-medium concentration. |
| ZnCl2 | 0.07 G_PER_L | SL-10 input 70 mg = 0.07 g / explicit made-up stock volume 1 L. This stock rate is not a receiving-medium concentration. |
| MnCl2 x 4 H2O | 0.1 G_PER_L | SL-10 input 100 mg = 0.1 g / explicit made-up stock volume 1 L. This stock rate is not a receiving-medium concentration. |
| H3BO3 | 0.006 G_PER_L | SL-10 input 6 mg = 0.006 g / explicit made-up stock volume 1 L. This stock rate is not a receiving-medium concentration. |
| CoCl2 x 6 H2O | 0.19 G_PER_L | SL-10 input 190 mg = 0.19 g / explicit made-up stock volume 1 L. This stock rate is not a receiving-medium concentration. |
| CuCl2 x 2 H2O | 0.002 G_PER_L | SL-10 input 2 mg = 0.002 g / explicit made-up stock volume 1 L. This stock rate is not a receiving-medium concentration. |
| NiCl2 x 6 H2O | 0.024 G_PER_L | SL-10 input 24 mg = 0.024 g / explicit made-up stock volume 1 L. This stock rate is not a receiving-medium concentration. Copied annotations do not establish this exact salt, hydrate or stereochemical form; archive them without inventing replacement identifiers. |
| Na2MoO4 x 2 H2O | 0.036 G_PER_L | SL-10 input 36 mg = 0.036 g / explicit made-up stock volume 1 L. This stock rate is not a receiving-medium concentration. |
| Distilled water | 0.99 L | Preparation input 990 ml / 1000 = 0.99 L, not mass, volume percent or measured final volume. |
Receiving-batch addition 1 ml / 1000 = 0.001 L of prepared stock, not g/L or an inferred ml/L rate. Stock strength and preparation remain separate.
Selenite-tungstate solution
Dose: 0.001 L
| Ingredient | Concentration | Notes |
|---|---|---|
| NaOH | Superseded flattening history, not a current quantity: [Collapsed 2 identical duplicates: 0.5, 0.5] Source batch input: 0.5 g. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Na2SeO3 x 5 H2O | Source batch input: 3 mg. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Na2WO4 x 2 H2O | Source batch input: 4 mg. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Distilled water | 1 L | Preparation input 1000 ml / 1000 = 1 L, not mass, volume percent or measured final volume. |
Receiving-batch addition 1 ml / 1000 = 0.001 L of prepared stock, not g/L or an inferred ml/L rate. Stock strength and preparation remain separate.
Sodium resazurin (0.1% w/v)
Dose: 0.0005 L
| Ingredient | Concentration | Notes |
|---|---|---|
| Sodium resazurin | 0.1 PERCENT_W_V | Explicit 0.1% w/v indicator stock, not the concentration in receiving medium. Keep its separate 0.50 ml dose. Copied annotations do not establish this exact salt, hydrate or stereochemical form; archive them without inventing replacement identifiers. |
Receiving-batch addition 0.5 ml / 1000 = 0.0005 L of prepared stock, not g/L or an inferred ml/L rate. Stock strength and preparation remain separate.
Seven vitamins solution
Dose: 0.001 L
| Ingredient | Concentration | Notes |
|---|---|---|
| Vitamin B12 | Source batch input: 100 mg. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| p-Aminobenzoic acid | Source batch input: 80 mg. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| D-(+)-biotin | Source batch input: 20 mg. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Nicotinic acid | Source batch input: 200 mg. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Calcium pantothenate | Source batch input: 100 mg. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Pyridoxine hydrochloride | Source batch input: 300 mg. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Thiamine-HCl x 2 H2O | Source batch input: 200 mg. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Distilled water | 1 L | Preparation input 1000 ml / 1000 = 1 L, not mass, volume percent or measured final volume. |
Receiving-batch addition 1 ml / 1000 = 0.001 L of prepared stock, not g/L or an inferred ml/L rate. Stock strength and preparation remain separate.
Growth-stimulating factors
Dose: 0.001 L
| Ingredient | Concentration | Notes |
|---|---|---|
| Isobutyric acid | Source batch input: 5 g. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Valeric acid | Source batch input: 5 g. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| 2-Methylbutyric acid | Source batch input: 5 g. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| 3-Methylbutyric acid | Source batch input: 5 g. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Caproic acid | Source batch input: 2 g. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Succinic acid | Source batch input: 6 g. No explicit final-volume/makeup statement was found for this stage in the inspected original. Retain the mass in notes; API volume/g_l and water input are not an independently verified denominator. | |
| Distilled water | 1 L | Preparation input 1000 ml / 1000 = 1 L, not mass, volume percent or measured final volume. |
| NaOH | Superseded flattening history, not a current quantity: [Collapsed 2 identical duplicates: 0.5, 0.5] Unquantified growth-factor stock titration to pH 9.0. No fixed addition or strength is stated; do not reuse the selenium-stock mass or dithionite carrier volume. |
Receiving-batch addition 1 ml / 1000 = 0.001 L of prepared stock, not g/L or an inferred ml/L rate. Stock strength and preparation remain separate.
Na-dithionite solution (5% w/v)
Dose: 0.001 L
| Ingredient | Concentration | Notes |
|---|---|---|
| NaOH | 0.0005 L | Superseded flattening history, not a current quantity: [Collapsed 2 identical duplicates: 0.5, 0.5] Preparation input 0.5 ml / 1000 = 0.0005 L, not mass, volume percent or measured final volume. Literal source attribute: 1 N. The 1 N carrier strength is separate from this input volume and from the selenium-stock NaOH mass. |
| Na2S2O4 | 5 PERCENT_W_V | Source stock heading explicitly states 5% w/v. Preserve its 0.5 g batch input, carrier/water recipe and receiving dose separately; the strength is not inferred from water volume. |
| Distilled water | 0.0095 L | Preparation input 9.5 ml / 1000 = 0.0095 L, not mass, volume percent or measured final volume. |
Receiving-batch addition 1 ml / 1000 = 0.001 L of prepared stock, not g/L or an inferred ml/L rate. Stock strength and preparation remain separate.
Target organisms
No target organisms are recorded.
Recipe variants
- Name
- DSM 16661 and DSM 21157 source prescription
- Relationship
- STRAIN_SPECIFIC_VARIANT
- Modifications
- Omit growth-stimulating factors and pressurize vials after inoculation to 2 bar with sterile 80% H2 and 20% CO2 gas mixture.
- Evidence
- Reference
- https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium829.pdf
- Supports
- SUPPORT
- Snippet
- For DSM 16661, DSM 21157: Omit growth-stimulating factors and pressurize vials after inoculation to 2 bar with sterile 80% H2 and 20% CO2 gas mixture.
- Explanation
- variants[0].name: Original strain-specific instruction, separate from the base recipe; no measured growth association is inferred. No unstated density, final volume, percent basis or chemical identifier is inferred. Locator=original recipe table/text; accessed=2026-10-09T03:35:49.362734+00:00; capture SHA256=8441671f114af61c997ae71ee4bf7c9e200d1fdf45764fe120e6a0709b35df80. Additional exact excerpt: For DSM 16661, DSM 21157: Omit growth-stimulating factors and pressurize vials after inoculation to 2 bar with sterile 80% H2 and 20% CO2 gas mixture. variants[0].relationship: Original strain-specific instruction, separate from the base recipe; no measured growth association is inferred. No unstated density, final volume, percent basis or chemical identifier is inferred. Locator=original recipe table/text; accessed=2026-10-09T03:35:49.362734+00:00; capture SHA256=8441671f114af61c997ae71ee4bf7c9e200d1fdf45764fe120e6a0709b35df80. Additional exact excerpt: For DSM 16661, DSM 21157: Omit growth-stimulating factors and pressurize vials after inoculation to 2 bar with sterile 80% H2 and 20% CO2 gas mixture. variants[0].modifications: Original strain-specific instruction, separate from the base recipe; no measured growth association is inferred. No unstated density, final volume, percent basis or chemical identifier is inferred. Locator=original recipe table/text; accessed=2026-10-09T03:35:49.362734+00:00; capture SHA256=8441671f114af61c997ae71ee4bf7c9e200d1fdf45764fe120e6a0709b35df80.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:12.401212Z | mediadive-import | Imported from MediaDive | Source: DSMZ, ID: 829 |
| 2026-01-28T19:48:40.912167Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T03:09:40.608870Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:19:09.044746Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:001978 |
| 2026-03-17T06:30:52.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:21.555297+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "DESULFUROBACTERIUM MEDIUM" to "desulfurobacterium_medium" for consistent matching |
| 2026-06-05T07:40:58.325873+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 29 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:56.235729+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 5 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-07T07:05:21.999367+00:00 | apply_cocktail_nesting.py | NESTED_FLATTENED_COCKTAIL | Moved 5 stock-strength component(s) out of ingredients into 2 solution(s): 1 -> 'Trace element solution SL-10' @ 1 ml/l; 4 -> 'Seven vitamins solution' @ 1 ml/l. Each moved component matched the MediaDive stock by name AND value; bulk ingredients sharing a name were left in place (#150). |
| 2026-08-15T20:07:58.058745+00:00 | dedupe_identical_ingredients.py | REMOVED_DUPLICATE_INGREDIENT_ROWS | Removed 3 ingredient row(s) that were identical in every field to another row in this record, which made the recipe read as double-strength in those components (#263): Sodium chloride, Tryptone, Yeast extract. |
| 2026-09-02T07:38:03.429470+00:00 | repair_merged_duplicates.py | REPAIRED_SUMMED_DUPLICATE_MERGE | Collapsed 1 ingredient row(s) whose concentration was the SUM of identical duplicate values written by cleanup_media_quality.py. Every merged part was the same value, so the pre-merge value is unambiguous and no source lookup was needed. Rows whose merged parts differ were left untouched. |
| 2026-10-09T04:52:49.323535+00:00 | codex | RESTORED_MEDIUM_829_SOURCE_FORMULATIONS_AND_STOCK_SCOPES_WITH_EVIDENCE | Restore exact-source medium-829 formulations and stock boundaries, preserve provider rates/nulls and source conflicts, repair quantity units and family scope, and retain prior evidence/history. Each scientific change is linked to an inspected source excerpt; no growth association inferred. |