Overview
- External ontology
- mediadive.medium:830d (source link unavailable) — R2A MEDIUM (MICROAEROBIC)
- Applications
-
- Microbial cultivation
- pH range
- {'min': 5.0, 'max': 5.5}
- Notes
- Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830d.pdf
Composition
flowchart LR
CultureMech_001988["r2a_medium_microaerobic"]
ing0_Yeast_extract["Yeast extract"]
CultureMech_001988 --> ing0_Yeast_extract
ing1_Proteose_peptone["Proteose peptone"]
CultureMech_001988 --> ing1_Proteose_peptone
ing2_Casamino_acids["Casamino acids"]
CultureMech_001988 --> ing2_Casamino_acids
ing3_Glucose["Glucose"]
CultureMech_001988 --> ing3_Glucose
CHEBI_17234["CHEBI:17234"]
ing3_Glucose -.-> CHEBI_17234
ing4_Starch["Starch"]
CultureMech_001988 --> ing4_Starch
CHEBI_28017["CHEBI:28017"]
ing4_Starch -.-> CHEBI_28017
ing5_Na_pyruvate["Na-pyruvate"]
CultureMech_001988 --> ing5_Na_pyruvate
CHEBI_50144["CHEBI:50144"]
ing5_Na_pyruvate -.-> CHEBI_50144
ing6_K2HPO4["K2HPO4"]
CultureMech_001988 --> ing6_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing6_K2HPO4 -.-> CHEBI_131527
ing7_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_001988 --> ing7_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing7_MgSO4_x_7_H2O -.-> CHEBI_31795
Ingredients (8)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Yeast extract | 0.5 G_PER_L | ||
| 2 | Proteose peptone | 0.5 G_PER_L | ||
| 3 | Casamino acids | 0.5 G_PER_L | ||
| 4 |
Glucose
C6H12O6 180.156 g/mol
|
0.5 G_PER_L |
CHEBI:17234
glucose
|
|
| 5 | Starch | 0.5 G_PER_L |
CHEBI:28017
starch
|
(soluble) |
| 6 |
Na-pyruvate
C3H3O3.Na 110.044 g/mol
|
0.3 G_PER_L |
CHEBI:50144
sodium pyruvate
|
|
| 7 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.3 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 8 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.05 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
Preparation
- Dissolve ingredients, then sparge solution with 80% N2 and 20% CO2 gas mixture for at least 30 - 45 min to remove dissolved oxygen and to saturate the solution with CO2. Dispense solution in vials suitable for anaerobic cultures (e.g., Balch-type tubes or serum vials) to 30% volume (e.g., 5 ml medium in a 16 ml Hungate-type tube) under the 80% N2 and 20% CO2 gas atmosphere. Close vials with butyl rubber septa to prevent the free exchange of oxygen with the external atmosphere and autoclave them. Adjust pH of the autoclaved medium to 5.0 - 5.5 using a sterile stock solution of sodium carbonate (5% w/v), prepared under 80% N2 and 20% CO2 gas mixture.
- Before inoculation, add sterile air to obtain 5% O2 in headspace gas atmosphere (e.g., add 2 ml air to a Hungate-type tube).
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:12.430856Z | mediadive-import | Imported from MediaDive | Source: DSMZ, ID: 830d |
| 2026-01-28T19:48:24.507731Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T06:19:09.134731Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:001988 |
| 2026-03-17T06:30:17.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:21.655996+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "R2A MEDIUM (MICROAEROBIC)" to "r2a_medium_microaerobic" for consistent matching |
| 2026-05-20T06:02:03.672907+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '5-5.5' -> {'min': 5.0, 'max': 5.5} |
| 2026-06-05T07:41:43.627002+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 6 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-08T23:19:50.014742+00:00 | chebi-regrounding-v1.0 | Corrected CHEBI ingredient grounding (audit G21/G22) | Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI). |
| 2026-06-10T07:47:10.779958+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-10-07T12:21:30.028294+00:00 | codex | CURATED_MEDIUM_CONCENTRATION_SOURCE_EVIDENCE | Exact medium/source membership, ingredient inventory/forms, physical-state conditions, literal snippets, and arithmetic checked. Stock boundaries, source-only rows, preparation context, and variants remain explicit follow-up tasks; secondary chemical mappings unchanged. |