Overview
- External ontology
- mediadive.medium:87a (source link unavailable) — CHLOROFLEXUS AGGREGANS MEDIUM
- Applications
-
- Microbial cultivation
- pH
- 8.2
- Notes
- Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium87a.pdf
Composition
flowchart LR
CultureMech_002039["chloroflexus_aggregans_medium"]
ing0_Yeast_extract["Yeast extract"]
CultureMech_002039 --> ing0_Yeast_extract
ing1_Glycyl_glycine["Glycyl-glycine"]
CultureMech_002039 --> ing1_Glycyl_glycine
CHEBI_17201["CHEBI:17201"]
ing1_Glycyl_glycine -.-> CHEBI_17201
ing2_Na2HPO4_x_2_H2O["Na2HPO4 x 2 H2O"]
CultureMech_002039 --> ing2_Na2HPO4_x_2_H2O
CHEBI_91258["CHEBI:91258"]
ing2_Na2HPO4_x_2_H2O -.-> CHEBI_91258
ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_002039 --> ing3_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
ing4_KNO3["KNO3"]
CultureMech_002039 --> ing4_KNO3
CHEBI_63043["CHEBI:63043"]
ing4_KNO3 -.-> CHEBI_63043
ing5_NaNO3["NaNO3"]
CultureMech_002039 --> ing5_NaNO3
CHEBI_63005["CHEBI:63005"]
ing5_NaNO3 -.-> CHEBI_63005
ing6_NaCl["NaCl"]
CultureMech_002039 --> ing6_NaCl
CHEBI_26710["CHEBI:26710"]
ing6_NaCl -.-> CHEBI_26710
ing7_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_002039 --> ing7_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing7_CaCl2_x_2_H2O -.-> CHEBI_86158
ing8_Fe_III__citrate["Fe(III) citrate"]
CultureMech_002039 --> ing8_Fe_III__citrate
CHEBI_144421["CHEBI:144421"]
ing8_Fe_III__citrate -.-> CHEBI_144421
ing9_Biotin["Biotin"]
CultureMech_002039 --> ing9_Biotin
CHEBI_15956["CHEBI:15956"]
ing9_Biotin -.-> CHEBI_15956
ing10_Vitamin_B12["Vitamin B12"]
CultureMech_002039 --> ing10_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing10_Vitamin_B12 -.-> CHEBI_176843
ing11_Calcium_pantothenate["Calcium pantothenate"]
CultureMech_002039 --> ing11_Calcium_pantothenate
CHEBI_31345["CHEBI:31345"]
ing11_Calcium_pantothenate -.-> CHEBI_31345
ing12_Na3_EDTA["Na3-EDTA"]
CultureMech_002039 --> ing12_Na3_EDTA
CHEBI_63125["CHEBI:63125"]
ing12_Na3_EDTA -.-> CHEBI_63125
ing13_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_002039 --> ing13_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing13_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing14_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_002039 --> ing14_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing14_MnCl2_x_4_H2O -.-> CHEBI_86368
ing15_H3BO3["H3BO3"]
CultureMech_002039 --> ing15_H3BO3
CHEBI_33118["CHEBI:33118"]
ing15_H3BO3 -.-> CHEBI_33118
ing16_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_002039 --> ing16_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing16_CoCl2_x_6_H2O -.-> CHEBI_53503
ing17_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_002039 --> ing17_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing17_CuCl2_x_2_H2O -.-> CHEBI_86318
ing18_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_002039 --> ing18_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing18_NiCl2_x_6_H2O -.-> CHEBI_34887
ing19_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_002039 --> ing19_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing19_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing20_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_002039 --> ing20_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing20_Na2S_x_9_H2O -.-> CHEBI_76209
Ingredients (21)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Yeast extract | 0.952381 G_PER_L | ||
| 2 |
Glycyl-glycine
C4H8N2O3 132.119 g/mol
|
0.952381 G_PER_L |
CHEBI:17201
glycylglycine
|
|
| 3 |
Na2HPO4 x 2 H2O
2H2O.HO4P.2Na 177.988 g/mol
|
0.0952381 G_PER_L |
CHEBI:91258
disodium hydrogenphosphate dihydrate
|
|
| 4 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.0952381 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 5 |
KNO3
K.NO3 101.102 g/mol
|
0.0952381 G_PER_L |
CHEBI:63043
potassium nitrate
|
|
| 6 |
NaNO3
NO3.Na 84.994 g/mol
|
0.47619 G_PER_L |
CHEBI:63005
sodium nitrate
|
|
| 7 |
NaCl
Cl.Na 58.443 g/mol
|
0.0952381 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 8 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.047619 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 9 |
Fe(III) citrate
C6H5FeO7 244.944 g/mol
|
5 G_PER_L |
CHEBI:144421
iron(III) citrate
|
|
| 10 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.05 G_PER_L |
CHEBI:15956
biotin
|
|
| 11 | Vitamin B12 | 0.01 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 12 |
Calcium pantothenate
2C9H16NO5.Ca 476.536 g/mol
|
0.5 G_PER_L |
CHEBI:31345
Calcium pantothenate
|
|
| 13 |
Na3-EDTA
C10H13N2O8.3Na 358.19 g/mol
|
2 G_PER_L |
CHEBI:63125
EDTA trisodium salt
|
|
| 14 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.1 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 15 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.03 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 16 |
H3BO3
H3BO3 61.833 g/mol
|
0.3 G_PER_L |
CHEBI:33118
boric acid
|
|
| 17 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.2 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 18 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.01 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 19 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.02 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 20 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.03 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 21 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
30 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
Preparation
- Adjust pH to 8.2.
- Boil the medium under a stream of nitrogen gas for a few minutes and distribute 90 ml medium into 100 ml screw-capped bottles. Bubble each bottle with nitrogen gas and close immediately with a rubber septum and screw tight. Autoclave at 121°C for 15 min. After autoclaving inject 1.0 ml of neutralized sulfide solution (0.03% end concentration) to each bottle. This medium can be stored for several months. Incubate the culture at 50°C at a light intensity of 300 - 500 lux. For heavy cell suspension supplement periodically with sterile yeast extract solution (0.1% end concentration, for more details see Ref. 3365, 3366).
- Adjust pH to 7.5. The solution is filter-sterilized.
- The sulfide solution is prepared in a 250 ml screw-capped bottle with a butyl rubber septum and a magnetic stirrer. The solution is bubbled with nitrogen gas, closed and autoclaved for 15 min. at 121°C. After cooling to room temperature the pH is adjusted to about 7.0 by adding of sterile 2 M H2SO4 drop-wise with a syringe without opening the bottle.
- Appearance of a yellow colour indicates the drop of pH to about 8. The solution should be stirred continuously to avoid precipitation of elemental sulfur. The final solution should be clear and is yellow in colour.
Solutions
Vitamin solution CA
Dose: 1 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Nicotinic acid | 1 G_PER_L | |
| Thiamine-HCl x 2 H2O | 1 G_PER_L | |
| p-Aminobenzoic acid | 0.5 G_PER_L | |
| Pyridoxine hydrochloride | 0.5 G_PER_L | |
| Folic acid | 0.5 G_PER_L |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:10.140063Z | mediadive-import | Imported from MediaDive | Source: DSMZ, ID: 87a |
| 2026-03-13T06:19:09.681304Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:002039 |
| 2026-03-17T06:30:30.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:22.267972+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "CHLOROFLEXUS AGGREGANS MEDIUM" to "chloroflexus_aggregans_medium" for consistent matching |
| 2026-06-05T07:40:53.309202+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 23 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.624396+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:54.473873+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-07T07:05:21.723140+00:00 | apply_cocktail_nesting.py | NESTED_FLATTENED_COCKTAIL | Moved 5 stock-strength component(s) out of ingredients into 1 solution(s): 5 -> 'Vitamin solution CA' @ 1 ml/l. Each moved component matched the MediaDive stock by name AND value; bulk ingredients sharing a name were left in place (#150). |