nitrososphaera_gargensis_medium

CultureMech:002321 archaea DEFINED LIQUID
Original name: NITROSOSPHAERA GARGENSIS MEDIUM

Overview

External ontology
mediadive.medium:J1148 (source link unavailable) — NITROSOSPHAERA GARGENSIS MEDIUM
Applications
  • Microbial cultivation
Notes
Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1148

Composition

flowchart LR
    CultureMech_002321["nitrososphaera_gargensis_medium"]
    ing0_KH2PO4["KH2PO4"]
    CultureMech_002321 --> ing0_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing0_KH2PO4 -.-> CHEBI_63036
    ing1_KCl["KCl"]
    CultureMech_002321 --> ing1_KCl
    CHEBI_32588["CHEBI:32588"]
    ing1_KCl -.-> CHEBI_32588
    ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_002321 --> ing2_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing3_NaCl["NaCl"]
    CultureMech_002321 --> ing3_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing3_NaCl -.-> CHEBI_26710
    ing4_CaCO3["CaCO3"]
    CultureMech_002321 --> ing4_CaCO3
    CHEBI_3311["CHEBI:3311"]
    ing4_CaCO3 -.-> CHEBI_3311
    ing5_NH4Cl["NH4Cl"]
    CultureMech_002321 --> ing5_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing5_NH4Cl -.-> CHEBI_31206
    ing6_HCl["HCl"]
    CultureMech_002321 --> ing6_HCl
    CHEBI_17883["CHEBI:17883"]
    ing6_HCl -.-> CHEBI_17883
    ing7_MnSO4_x_5_H2O["MnSO4 x 5 H2O"]
    CultureMech_002321 --> ing7_MnSO4_x_5_H2O
    CHEBI_131524["CHEBI:131524"]
    ing7_MnSO4_x_5_H2O -.-> CHEBI_131524
    ing8_H3BO3["H3BO3"]
    CultureMech_002321 --> ing8_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing8_H3BO3 -.-> CHEBI_33118
    ing9_ZnCl2["ZnCl2"]
    CultureMech_002321 --> ing9_ZnCl2
    CHEBI_49976["CHEBI:49976"]
    ing9_ZnCl2 -.-> CHEBI_49976
    ing10_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_002321 --> ing10_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing10_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing11_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_002321 --> ing11_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing11_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing12_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_002321 --> ing12_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing12_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing13_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_002321 --> ing13_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing13_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing14_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_002321 --> ing14_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing14_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing15_NaOH["NaOH"]
    CultureMech_002321 --> ing15_NaOH
    CHEBI_32145["CHEBI:32145"]
    ing15_NaOH -.-> CHEBI_32145
    ing16_Na2SeO3_x_5_H2O["Na2SeO3 x 5 H2O"]
    CultureMech_002321 --> ing16_Na2SeO3_x_5_H2O
    CHEBI_131361["CHEBI:131361"]
    ing16_Na2SeO3_x_5_H2O -.-> CHEBI_131361
    ing17_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
    CultureMech_002321 --> ing17_Na2WO4_x_2_H2O
    CHEBI_63939["CHEBI:63939"]
    ing17_Na2WO4_x_2_H2O -.-> CHEBI_63939

Ingredients (18)

# Ingredient Concentration Ontology Notes
1 KH2PO4
H2O4P.K 136.084 g/mol
0.0489237 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
2 KCl
Cl.K 74.551 g/mol
0.0733855 G_PER_L CHEBI:32588
potassium chloride
3 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.0489237 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
4 NaCl
Cl.Na 58.443 g/mol
0.571429 G_PER_L CHEBI:26710
sodium chloride
5 CaCO3
CO3.Ca 100.086 g/mol
3.91389 G_PER_L CHEBI:3311
calcium carbonate
6 NH4Cl
Cl.H4N 53.492 g/mol
20 G_PER_L CHEBI:31206
ammonium chloride
7 HCl
HCl 36.461 g/mol
2.5 G_PER_L CHEBI:17883
hydrogen chloride
8 MnSO4 x 5 H2O
5H2O.Mn.O4S 241.076 g/mol
0.0479042 G_PER_L CHEBI:131524
manganese(II) sulfate pentahydrate
9 H3BO3
H3BO3 61.833 g/mol
0.0499002 G_PER_L CHEBI:33118
boric acid
10 ZnCl2
2Cl.Zn 136.296 g/mol
0.0698603 G_PER_L CHEBI:49976
zinc dichloride
11 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.0728543 G_PER_L CHEBI:75213
sodium molybdate dihydrate
12 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
0.0199601 G_PER_L CHEBI:86318
copper(II) chloride dihydrate
13 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.0239521 G_PER_L CHEBI:34887
nickel dichloride
14 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.0798403 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
15 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.998004 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
16 NaOH
HO.Na 39.997 g/mol
0.4 G_PER_L CHEBI:32145
sodium hydroxide
17 Na2SeO3 x 5 H2O
5H2O.2Na.O3Se 263.012 g/mol
0.006 G_PER_L CHEBI:131361
disodium selenite pentahydrate
18 Na2WO4 x 2 H2O
2H2O.2Na.O4W 329.846 g/mol
0.008 G_PER_L CHEBI:63939
sodium tungstate dihydrate

Preparation

  1. Mix components and autoclave (CaCO3 will not fully dissolve). After cooling, add the following solutions to the medium (autoclaved or *filter-sterilized):
  2. Comments: Typically, prepare the medium in glass bottles with plastic caps leaving an ample head space (e.g., 50 ml medium in 250 ml-Duran&reg; glass bottles). Cultivate in the dark without agitation. Check growth by phase-contrast microscopy. Also, it can be checked by measuring ammonium concentration. Once ammonium in the medium is depleted, it can be fed by the addition of another 50 mM NH4Cl solution (final 1.0 mM). The ammonium-feeding can be repeated several times. If the culture stops the ammonium oxidation or begins to grow even slower, nitrite may be accumulated up to a level causing growth inhibition in the culture (ca. 15 mM). If so, replace the medium as follows: spin down the culture (< 65,000 g for 15 min), remove the supernatant, and add fresh culture medium to the white pellet. Then, suspend the pellet and remove the suspension to a new glass bottle.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-26T17:53:18.808827Z mediadive-import Imported from MediaDive Source: JCM, ID: J1148
2026-03-13T06:19:12.339066Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:002321
2026-03-17T06:29:50.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:25.295732+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "NITROSOSPHAERA GARGENSIS MEDIUM" to "nitrososphaera_gargensis_medium" for consistent matching
2026-06-05T07:40:16.547242+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 18 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:42.737789+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.