Overview
- External ontology
- mediadive.medium:J1148 (source link unavailable) — NITROSOSPHAERA GARGENSIS MEDIUM
- Applications
-
- Microbial cultivation
- Notes
- Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1148
Composition
flowchart LR
CultureMech_002321["nitrososphaera_gargensis_medium"]
ing0_KH2PO4["KH2PO4"]
CultureMech_002321 --> ing0_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing0_KH2PO4 -.-> CHEBI_63036
ing1_KCl["KCl"]
CultureMech_002321 --> ing1_KCl
CHEBI_32588["CHEBI:32588"]
ing1_KCl -.-> CHEBI_32588
ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_002321 --> ing2_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
ing3_NaCl["NaCl"]
CultureMech_002321 --> ing3_NaCl
CHEBI_26710["CHEBI:26710"]
ing3_NaCl -.-> CHEBI_26710
ing4_CaCO3["CaCO3"]
CultureMech_002321 --> ing4_CaCO3
CHEBI_3311["CHEBI:3311"]
ing4_CaCO3 -.-> CHEBI_3311
ing5_NH4Cl["NH4Cl"]
CultureMech_002321 --> ing5_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing5_NH4Cl -.-> CHEBI_31206
ing6_HCl["HCl"]
CultureMech_002321 --> ing6_HCl
CHEBI_17883["CHEBI:17883"]
ing6_HCl -.-> CHEBI_17883
ing7_MnSO4_x_5_H2O["MnSO4 x 5 H2O"]
CultureMech_002321 --> ing7_MnSO4_x_5_H2O
CHEBI_131524["CHEBI:131524"]
ing7_MnSO4_x_5_H2O -.-> CHEBI_131524
ing8_H3BO3["H3BO3"]
CultureMech_002321 --> ing8_H3BO3
CHEBI_33118["CHEBI:33118"]
ing8_H3BO3 -.-> CHEBI_33118
ing9_ZnCl2["ZnCl2"]
CultureMech_002321 --> ing9_ZnCl2
CHEBI_49976["CHEBI:49976"]
ing9_ZnCl2 -.-> CHEBI_49976
ing10_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_002321 --> ing10_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing10_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing11_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_002321 --> ing11_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing11_CuCl2_x_2_H2O -.-> CHEBI_86318
ing12_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_002321 --> ing12_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing12_NiCl2_x_6_H2O -.-> CHEBI_34887
ing13_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_002321 --> ing13_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing13_CoCl2_x_6_H2O -.-> CHEBI_53503
ing14_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_002321 --> ing14_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing14_FeSO4_x_7_H2O -.-> CHEBI_75836
ing15_NaOH["NaOH"]
CultureMech_002321 --> ing15_NaOH
CHEBI_32145["CHEBI:32145"]
ing15_NaOH -.-> CHEBI_32145
ing16_Na2SeO3_x_5_H2O["Na2SeO3 x 5 H2O"]
CultureMech_002321 --> ing16_Na2SeO3_x_5_H2O
CHEBI_131361["CHEBI:131361"]
ing16_Na2SeO3_x_5_H2O -.-> CHEBI_131361
ing17_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
CultureMech_002321 --> ing17_Na2WO4_x_2_H2O
CHEBI_63939["CHEBI:63939"]
ing17_Na2WO4_x_2_H2O -.-> CHEBI_63939
Ingredients (18)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.0489237 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 2 |
KCl
Cl.K 74.551 g/mol
|
0.0733855 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 3 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.0489237 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 4 |
NaCl
Cl.Na 58.443 g/mol
|
0.571429 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 5 |
CaCO3
CO3.Ca 100.086 g/mol
|
3.91389 G_PER_L |
CHEBI:3311
calcium carbonate
|
|
| 6 |
NH4Cl
Cl.H4N 53.492 g/mol
|
20 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 7 |
HCl
HCl 36.461 g/mol
|
2.5 G_PER_L |
CHEBI:17883
hydrogen chloride
|
|
| 8 |
MnSO4 x 5 H2O
5H2O.Mn.O4S 241.076 g/mol
|
0.0479042 G_PER_L |
CHEBI:131524
manganese(II) sulfate pentahydrate
|
|
| 9 |
H3BO3
H3BO3 61.833 g/mol
|
0.0499002 G_PER_L |
CHEBI:33118
boric acid
|
|
| 10 |
ZnCl2
2Cl.Zn 136.296 g/mol
|
0.0698603 G_PER_L |
CHEBI:49976
zinc dichloride
|
|
| 11 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.0728543 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 12 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.0199601 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 13 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.0239521 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 14 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.0798403 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 15 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.998004 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 16 |
NaOH
HO.Na 39.997 g/mol
|
0.4 G_PER_L |
CHEBI:32145
sodium hydroxide
|
|
| 17 |
Na2SeO3 x 5 H2O
5H2O.2Na.O3Se 263.012 g/mol
|
0.006 G_PER_L |
CHEBI:131361
disodium selenite pentahydrate
|
|
| 18 |
Na2WO4 x 2 H2O
2H2O.2Na.O4W 329.846 g/mol
|
0.008 G_PER_L |
CHEBI:63939
sodium tungstate dihydrate
|
Preparation
- Mix components and autoclave (CaCO3 will not fully dissolve). After cooling, add the following solutions to the medium (autoclaved or *filter-sterilized):
- Comments: Typically, prepare the medium in glass bottles with plastic caps leaving an ample head space (e.g., 50 ml medium in 250 ml-Duran® glass bottles). Cultivate in the dark without agitation. Check growth by phase-contrast microscopy. Also, it can be checked by measuring ammonium concentration. Once ammonium in the medium is depleted, it can be fed by the addition of another 50 mM NH4Cl solution (final 1.0 mM). The ammonium-feeding can be repeated several times. If the culture stops the ammonium oxidation or begins to grow even slower, nitrite may be accumulated up to a level causing growth inhibition in the culture (ca. 15 mM). If so, replace the medium as follows: spin down the culture (< 65,000 g for 15 min), remove the supernatant, and add fresh culture medium to the white pellet. Then, suspend the pellet and remove the suspension to a new glass bottle.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:18.808827Z | mediadive-import | Imported from MediaDive | Source: JCM, ID: J1148 |
| 2026-03-13T06:19:12.339066Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:002321 |
| 2026-03-17T06:29:50.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:25.295732+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "NITROSOSPHAERA GARGENSIS MEDIUM" to "nitrososphaera_gargensis_medium" for consistent matching |
| 2026-06-05T07:40:16.547242+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 18 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:42.737789+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |