Overview
- External ontology
- mediadive.medium:J403 (source link unavailable) — ACETOBACTERIUM SUBMARINUS MEDIUM
- Applications
-
- Microbial cultivation
- pH
- 7.0
- High-metal flag
- True
- Notes
- Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=403
Composition
flowchart LR
CultureMech_002759["acetobacterium_submarinus_medium"]
ing0_Sea_Salt["Sea Salt"]
CultureMech_002759 --> ing0_Sea_Salt
ing1_Yeast_extract["Yeast extract"]
CultureMech_002759 --> ing1_Yeast_extract
ing2_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
CultureMech_002759 --> ing2_Na2WO4_x_2_H2O
CHEBI_63939["CHEBI:63939"]
ing2_Na2WO4_x_2_H2O -.-> CHEBI_63939
ing3_Na2SeO4["Na2SeO4"]
CultureMech_002759 --> ing3_Na2SeO4
CHEBI_77775["CHEBI:77775"]
ing3_Na2SeO4 -.-> CHEBI_77775
ing4_Sodium_acetate["Sodium acetate"]
CultureMech_002759 --> ing4_Sodium_acetate
CHEBI_32954["CHEBI:32954"]
ing4_Sodium_acetate -.-> CHEBI_32954
ing5_Methylamine["Methylamine"]
CultureMech_002759 --> ing5_Methylamine
CHEBI_16830["CHEBI:16830"]
ing5_Methylamine -.-> CHEBI_16830
ing6_Sodium_formate["Sodium formate"]
CultureMech_002759 --> ing6_Sodium_formate
CHEBI_62965["CHEBI:62965"]
ing6_Sodium_formate -.-> CHEBI_62965
ing7_Methanol["Methanol"]
CultureMech_002759 --> ing7_Methanol
CHEBI_17790["CHEBI:17790"]
ing7_Methanol -.-> CHEBI_17790
ing8_KH2PO4["KH2PO4"]
CultureMech_002759 --> ing8_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing8_KH2PO4 -.-> CHEBI_63036
ing9_NH4Cl["NH4Cl"]
CultureMech_002759 --> ing9_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing9_NH4Cl -.-> CHEBI_31206
ing10_Resazurin["Resazurin"]
CultureMech_002759 --> ing10_Resazurin
CHEBI_8806["CHEBI:8806"]
ing10_Resazurin -.-> CHEBI_8806
ing11_NaHCO3["NaHCO3"]
CultureMech_002759 --> ing11_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing11_NaHCO3 -.-> CHEBI_32139
ing12_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_002759 --> ing12_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing12_Na2S_x_9_H2O -.-> CHEBI_76209
ing13_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
CultureMech_002759 --> ing13_p_Aminobenzoic_acid
CHEBI_30753["CHEBI:30753"]
ing13_p_Aminobenzoic_acid -.-> CHEBI_30753
ing14_Biotin["Biotin"]
CultureMech_002759 --> ing14_Biotin
CHEBI_15956["CHEBI:15956"]
ing14_Biotin -.-> CHEBI_15956
ing15_Nicotinic_acid["Nicotinic acid"]
CultureMech_002759 --> ing15_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing15_Nicotinic_acid -.-> CHEBI_15940
ing16_DL_Calcium_pantothenate["DL-Calcium pantothenate"]
CultureMech_002759 --> ing16_DL_Calcium_pantothenate
CHEBI_31345["CHEBI:31345"]
ing16_DL_Calcium_pantothenate -.-> CHEBI_31345
ing17_Pyridoxine_hydrochloride["Pyridoxine hydrochloride"]
CultureMech_002759 --> ing17_Pyridoxine_hydrochloride
CHEBI_30961["CHEBI:30961"]
ing17_Pyridoxine_hydrochloride -.-> CHEBI_30961
ing18_Sodium_phosphate_buffer["Sodium phosphate buffer"]
CultureMech_002759 --> ing18_Sodium_phosphate_buffer
ing19_Thiamine_HCl["Thiamine HCl"]
CultureMech_002759 --> ing19_Thiamine_HCl
CHEBI_49105["CHEBI:49105"]
ing19_Thiamine_HCl -.-> CHEBI_49105
ing20_Vitamin_B12["Vitamin B12"]
CultureMech_002759 --> ing20_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing20_Vitamin_B12 -.-> CHEBI_176843
ing21_Nitrilotriacetic_acid["Nitrilotriacetic acid"]
CultureMech_002759 --> ing21_Nitrilotriacetic_acid
CHEBI_44557["CHEBI:44557"]
ing21_Nitrilotriacetic_acid -.-> CHEBI_44557
ing22_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_002759 --> ing22_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing22_FeSO4_x_7_H2O -.-> CHEBI_75836
ing23_H3BO3["H3BO3"]
CultureMech_002759 --> ing23_H3BO3
CHEBI_33118["CHEBI:33118"]
ing23_H3BO3 -.-> CHEBI_33118
ing24_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_002759 --> ing24_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing24_MnCl2_x_4_H2O -.-> CHEBI_86368
ing25_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_002759 --> ing25_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing25_CoCl2_x_6_H2O -.-> CHEBI_53503
ing26_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_002759 --> ing26_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing26_CuCl2_x_2_H2O -.-> CHEBI_86318
ing27_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_002759 --> ing27_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing27_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing28_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_002759 --> ing28_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing28_Na2MoO4_x_2_H2O -.-> CHEBI_75213
Ingredients (29)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Sea Salt | 29.7324 G_PER_L | ||
| 2 | Yeast extract | 0.099108 G_PER_L | ||
| 3 |
Na2WO4 x 2 H2O
2H2O.2Na.O4W 329.846 g/mol
|
0.0297324 G_PER_L |
CHEBI:63939
sodium tungstate dihydrate
|
|
| 4 |
Na2SeO4
2Na.O4Se 188.936 g/mol
|
0.00049554 G_PER_L |
CHEBI:77775
sodium selenate
|
|
| 5 |
Sodium acetate
C2H3O2.Na 82.034 g/mol
|
0.99108 G_PER_L |
CHEBI:32954
sodium acetate
|
|
| 6 |
Methylamine
CH5N 31.058 g/mol
|
1.98216 G_PER_L |
CHEBI:16830
methylamine
|
|
| 7 |
Sodium formate
CHO2.Na 68.007 g/mol
|
4.9554 G_PER_L |
CHEBI:62965
sodium formate
|
|
| 8 |
Methanol
CH4O 32.042 g/mol
|
5 G_PER_L |
CHEBI:17790
methanol
|
|
| 9 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.198216 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 10 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.267592 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 11 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.00049554 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 12 |
NaHCO3
CHO3.Na 84.006 g/mol
|
1.24876 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 13 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
0.49554 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
|
| 14 |
p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
|
0.04 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
|
| 15 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.01 G_PER_L |
CHEBI:15956
biotin
|
|
| 16 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
0.1 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 17 |
DL-Calcium pantothenate
2C9H16NO5.Ca 476.536 g/mol
|
0.05 G_PER_L |
CHEBI:31345
Calcium pantothenate
|
|
| 18 |
Pyridoxine hydrochloride
C8H11NO3.HCl 205.641 g/mol
|
0.1 G_PER_L |
CHEBI:30961
pyridoxine hydrochloride
|
|
| 19 | Sodium phosphate buffer | 100.0 G_PER_L | [Collapsed 2 identical duplicates: 100.0, 100.0] | |
| 20 |
Thiamine HCl
C12H17N4OS.Cl.HCl 337.276 g/mol
|
0.1 G_PER_L |
CHEBI:49105
thiamine hydrochloride
|
|
| 21 | Vitamin B12 | 0.05 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 22 |
Nitrilotriacetic acid
C6H9NO6 191.139 g/mol
|
12.8 G_PER_L |
CHEBI:44557
nitrilotriacetic acid
|
|
| 23 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.42 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 24 |
H3BO3
H3BO3 61.833 g/mol
|
0.01 G_PER_L |
CHEBI:33118
boric acid
|
|
| 25 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.1 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 26 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.17 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 27 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.02 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 28 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.21 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 29 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.01 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Preparation
- Mix ingredients except methanol, NaHCO3 and Na2S x 9H2O, bring to a boil and cool down under a stream of N2 gas. Add methanol to the medium and distribute into culture vessels (e.g., 20 ml of the medium in 120 ml serum bottles) under a stream of H2-CO2 (4:1, v/v) gas mixture, seal with butyl rubber stoppers, and autoclave. Separately autoclave 5% Na2S x 9H2O solution under a N2 atmosphere. Filer-sterilize 8% NaHCO3 solution and store under a N2-CO2 (4:1, v/v) gas mixture. Before inoculation, add the sterile NaHCO3 and Na2S x 9H2O solutions to the medium, and readjust pH to 7.0, if necessary. Pressurize the inoculated bottles to 200 kPa H2-CO2 (4:1, v/v).
- Dissolve nitrilotriacetic acid in 800 ml distilled water and adjust pH to 6.5 with NaOH. Then proceed to add the minerals and bring volume to 1.0 L.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:16.518685Z | mediadive-import | Imported from MediaDive | Source: JCM, ID: J403 |
| 2026-03-13T03:09:44.508068Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:19:15.537285Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:002759 |
| 2026-03-17T06:30:57.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:28.947246+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "ACETOBACTERIUM SUBMARINUS MEDIUM" to "acetobacterium_submarinus_medium" for consistent matching |
| 2026-06-05T07:40:46.824875+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 25 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.460303+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:52.411503+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-02T07:37:54.902379+00:00 | repair_merged_duplicates.py | REPAIRED_SUMMED_DUPLICATE_MERGE | Collapsed 1 ingredient row(s) whose concentration was the SUM of identical duplicate values written by cleanup_media_quality.py. Every merged part was the same value, so the pre-merge value is unambiguous and no source lookup was needed. Rows whose merged parts differ were left untouched. |