dethiosulfovibrio_ii_medium

CultureMech:003101 bacterial COMPLEX LIQUID
Original name: DETHIOSULFOVIBRIO II MEDIUM

Overview

External ontology
mediadive.medium:J758 (source link unavailable) — DETHIOSULFOVIBRIO II MEDIUM
Applications
  • Microbial cultivation
pH range
{'min': 6.7, 'max': 6.8}
Notes
JCM Medium 758, MediaDive J758, and TOGO M783 describe Dethiosulfovibrio II Medium as a 1.034 L anoxic N2 medium containing 1.0 L distilled water, 1.0 ml each of FeCl2 solution and Trace element solution from JCM Medium 187, 0.5 mg resazurin, 2.0 ml 10% CaCl2 x 2 H2O, 20.0 ml 12.5% Na2S2O3 x 5 H2O, and 10.0 ml 5% Na2S x 9 H2O stocks.

Composition

flowchart LR
    CultureMech_003101["dethiosulfovibrio_ii_medium"]
    ing0_NaCl["NaCl"]
    CultureMech_003101 --> ing0_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing0_NaCl -.-> CHEBI_26710
    ing1_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_003101 --> ing1_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing1_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing2_KH2PO4["KH2PO4"]
    CultureMech_003101 --> ing2_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing2_KH2PO4 -.-> CHEBI_63036
    ing3_Trisodium_citrate_x_H2O["Trisodium citrate x H2O"]
    CultureMech_003101 --> ing3_Trisodium_citrate_x_H2O
    CHEBI_53258["CHEBI:53258"]
    ing3_Trisodium_citrate_x_H2O -.-> CHEBI_53258
    ing4_Yeast_extract["Yeast extract"]
    CultureMech_003101 --> ing4_Yeast_extract
    ing5_Bacto_peptone["Bacto peptone"]
    CultureMech_003101 --> ing5_Bacto_peptone
    ing6_Resazurin["Resazurin"]
    CultureMech_003101 --> ing6_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing6_Resazurin -.-> CHEBI_8806
    ing7_Distilled_water["Distilled water"]
    CultureMech_003101 --> ing7_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing7_Distilled_water -.-> CHEBI_15377

Ingredients (8)

# Ingredient Concentration Ontology Notes
1 NaCl
Cl.Na 58.443 g/mol
19.3424 G_PER_L CHEBI:26710
sodium chloride
MediaDive J758 / JCM Medium 758 lists 19.3424 g/L NaCl.
2 MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
2.90135 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
MediaDive J758 / JCM Medium 758 lists 2.90135 g/L MgCl2 x 6 H2O.
3 KH2PO4
H2O4P.K 136.084 g/mol
0.967118 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
MediaDive J758 / JCM Medium 758 lists 0.967118 g/L KH2PO4.
4 Trisodium citrate x H2O
C6H5O7.3Na 258.069 g/mol
2.90135 G_PER_L CHEBI:53258
sodium citrate
MediaDive J758 / JCM Medium 758 lists 2.90135 g/L Trisodium citrate x H2O.
5 Yeast extract 4.83559 G_PER_L FOODON:03315426
yeast extract
MediaDive J758 / JCM Medium 758 lists 4.83559 g/L Yeast extract.
6 Bacto peptone 1.93424 G_PER_L MediaDive J758 / JCM Medium 758 lists 1.93424 g/L Bacto peptone.
7 Resazurin
C12H7NO4 229.191 g/mol
0.483559 MG_PER_L CHEBI:8806
Resazurin
MediaDive J758 / JCM Medium 758 lists 0.483559 mg/L Resazurin.
8 Distilled water
H2O 18.015 g/mol
967.118 ML_PER_L CHEBI:15377
water
MediaDive J758 / JCM Medium 758 contributes 967.118 ml/L distilled water.

Preparation

  1. Mix main-solution components including FeCl2 solution, Trace element solution, and 967.118 ml/L distilled water under a N2 atmosphere.
  2. Autoclave the main solution under a N2 atmosphere.
  3. After cooling, add 1.93424 ml/L 10% CaCl2 x 2 H2O solution, 19.3424 ml/L 12.5% Na2S2O3 x 5 H2O solution, and 9.67118 ml/L 5% Na2S x 9 H2O solution from sterile anaerobic stocks stored under N2; the thiosulfate stock is filter-sterilized.
  4. Adjust pH to 6.7-6.8 if necessary.

Solutions

FeCl2 solution

Dose: 0.967118 ML_PER_L

Stock composition
IngredientConcentrationNotes
HCl 2.5 G_PER_L JCM Medium 187 lists 2.5 g/L HCl.
FeCl2 x 4 H2O 1.5 G_PER_L JCM Medium 187 lists 1.5 g/L FeCl2 x 4 H2O.
Distilled water 990.0 ML_PER_L JCM Medium 187 makes FeCl2 solution with 990.0 ml water.
MediaDive J758 / JCM Medium 758 adds 0.967118 ml/L FeCl2 solution.

Trace element solution

Dose: 0.967118 ML_PER_L

Stock composition
IngredientConcentrationNotes
ZnCl2 70.0 MG_PER_L JCM Medium 187 lists 70.0 mg/L ZnCl2.
MnCl2 x 4 H2O 100.0 MG_PER_L JCM Medium 187 lists 100.0 mg/L MnCl2 x 4 H2O.
H3BO3 6.0 MG_PER_L JCM Medium 187 lists 6.0 mg/L H3BO3.
CoCl2 x 6 H2O 190.0 MG_PER_L JCM Medium 187 lists 190.0 mg/L CoCl2 x 6 H2O.
CuCl2 x 2 H2O 2.0 MG_PER_L JCM Medium 187 lists 2.0 mg/L CuCl2 x 2 H2O.
NiCl2 x 6 H2O 24.0 MG_PER_L JCM Medium 187 lists 24.0 mg/L NiCl2 x 6 H2O.
Na2MoO4 x 2 H2O 36.0 MG_PER_L JCM Medium 187 lists 36.0 mg/L Na2MoO4 x 2 H2O.
Distilled water 1000.0 ML_PER_L JCM Medium 187 makes Trace element solution up to 1.0 L.
MediaDive J758 / JCM Medium 758 adds 0.967118 ml/L Trace element solution.

10% CaCl2 x 2 H2O solution

Dose: 1.93424 ML_PER_L

Stock composition
IngredientConcentrationNotes
CaCl2 x 2 H2O 10.0 PERCENT_W_V MediaDive J758 / JCM Medium 758 specifies 10% CaCl2 x 2 H2O solution as 10.0% w/v.
MediaDive J758 / JCM Medium 758 adds 1.93424 ml/L 10% CaCl2 x 2 H2O solution.

12.5% Na2S2O3 x 5 H2O solution

Dose: 19.3424 ML_PER_L

Stock composition
IngredientConcentrationNotes
Na2S2O3 x 5 H2O 12.5 PERCENT_W_V MediaDive J758 / JCM Medium 758 specifies 12.5% Na2S2O3 x 5 H2O solution as 12.5% w/v.
MediaDive J758 / JCM Medium 758 adds 19.3424 ml/L 12.5% Na2S2O3 x 5 H2O solution.

5% Na2S x 9 H2O solution

Dose: 9.67118 ML_PER_L

Stock composition
IngredientConcentrationNotes
Na2S x 9 H2O 5.0 PERCENT_W_V MediaDive J758 / JCM Medium 758 specifies 5% Na2S x 9 H2O solution as 5.0% w/v.
MediaDive J758 / JCM Medium 758 adds 9.67118 ml/L 5% Na2S x 9 H2O solution.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-26T17:53:17.512320Z mediadive-import Imported from MediaDive Source: JCM, ID: J758
2026-03-13T06:19:17.833284Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:003101
2026-03-17T06:30:51.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:31.605000+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "DETHIOSULFOVIBRIO II MEDIUM" to "dethiosulfovibrio_ii_medium" for consistent matching
2026-06-05T07:40:58.595732+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 16 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:56.340926+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-09-11T00:00:00-07:00 repair_togo_m783_dethiosulfovibrio_score15.py RESOLVED_JCM_758_DETHIOSULFOVIBRIO_II_MEDIUM Moved FeCl2 solution, Trace element solution, 10% CaCl2 x 2 H2O, 12.5% Na2S2O3 x 5 H2O, and 5% Na2S x 9 H2O into nested solution entries, restored main distilled water and anaerobic N2 handling, added the pH range, and linked the TOGO M783 source duplicate.