Overview
- External ontology
- mediadive.medium:J758 (source link unavailable) — DETHIOSULFOVIBRIO II MEDIUM
- Applications
-
- Microbial cultivation
- pH range
- {'min': 6.7, 'max': 6.8}
- Notes
- JCM Medium 758, MediaDive J758, and TOGO M783 describe Dethiosulfovibrio II Medium as a 1.034 L anoxic N2 medium containing 1.0 L distilled water, 1.0 ml each of FeCl2 solution and Trace element solution from JCM Medium 187, 0.5 mg resazurin, 2.0 ml 10% CaCl2 x 2 H2O, 20.0 ml 12.5% Na2S2O3 x 5 H2O, and 10.0 ml 5% Na2S x 9 H2O stocks.
Composition
flowchart LR
CultureMech_003101["dethiosulfovibrio_ii_medium"]
ing0_NaCl["NaCl"]
CultureMech_003101 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_003101 --> ing1_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing1_MgCl2_x_6_H2O -.-> CHEBI_86345
ing2_KH2PO4["KH2PO4"]
CultureMech_003101 --> ing2_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing2_KH2PO4 -.-> CHEBI_63036
ing3_Trisodium_citrate_x_H2O["Trisodium citrate x H2O"]
CultureMech_003101 --> ing3_Trisodium_citrate_x_H2O
CHEBI_53258["CHEBI:53258"]
ing3_Trisodium_citrate_x_H2O -.-> CHEBI_53258
ing4_Yeast_extract["Yeast extract"]
CultureMech_003101 --> ing4_Yeast_extract
ing5_Bacto_peptone["Bacto peptone"]
CultureMech_003101 --> ing5_Bacto_peptone
ing6_Resazurin["Resazurin"]
CultureMech_003101 --> ing6_Resazurin
CHEBI_8806["CHEBI:8806"]
ing6_Resazurin -.-> CHEBI_8806
ing7_Distilled_water["Distilled water"]
CultureMech_003101 --> ing7_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing7_Distilled_water -.-> CHEBI_15377
Ingredients (8)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
19.3424 G_PER_L |
CHEBI:26710
sodium chloride
|
MediaDive J758 / JCM Medium 758 lists 19.3424 g/L NaCl. |
| 2 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
2.90135 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
MediaDive J758 / JCM Medium 758 lists 2.90135 g/L MgCl2 x 6 H2O. |
| 3 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.967118 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
MediaDive J758 / JCM Medium 758 lists 0.967118 g/L KH2PO4. |
| 4 |
Trisodium citrate x H2O
C6H5O7.3Na 258.069 g/mol
|
2.90135 G_PER_L |
CHEBI:53258
sodium citrate
|
MediaDive J758 / JCM Medium 758 lists 2.90135 g/L Trisodium citrate x H2O. |
| 5 | Yeast extract | 4.83559 G_PER_L |
FOODON:03315426
yeast extract
|
MediaDive J758 / JCM Medium 758 lists 4.83559 g/L Yeast extract. |
| 6 | Bacto peptone | 1.93424 G_PER_L | MediaDive J758 / JCM Medium 758 lists 1.93424 g/L Bacto peptone. | |
| 7 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.483559 MG_PER_L |
CHEBI:8806
Resazurin
|
MediaDive J758 / JCM Medium 758 lists 0.483559 mg/L Resazurin. |
| 8 |
Distilled water
H2O 18.015 g/mol
|
967.118 ML_PER_L |
CHEBI:15377
water
|
MediaDive J758 / JCM Medium 758 contributes 967.118 ml/L distilled water. |
Preparation
- Mix main-solution components including FeCl2 solution, Trace element solution, and 967.118 ml/L distilled water under a N2 atmosphere.
- Autoclave the main solution under a N2 atmosphere.
- After cooling, add 1.93424 ml/L 10% CaCl2 x 2 H2O solution, 19.3424 ml/L 12.5% Na2S2O3 x 5 H2O solution, and 9.67118 ml/L 5% Na2S x 9 H2O solution from sterile anaerobic stocks stored under N2; the thiosulfate stock is filter-sterilized.
- Adjust pH to 6.7-6.8 if necessary.
Solutions
FeCl2 solution
Dose: 0.967118 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| HCl | 2.5 G_PER_L | JCM Medium 187 lists 2.5 g/L HCl. |
| FeCl2 x 4 H2O | 1.5 G_PER_L | JCM Medium 187 lists 1.5 g/L FeCl2 x 4 H2O. |
| Distilled water | 990.0 ML_PER_L | JCM Medium 187 makes FeCl2 solution with 990.0 ml water. |
MediaDive J758 / JCM Medium 758 adds 0.967118 ml/L FeCl2 solution.
Trace element solution
Dose: 0.967118 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| ZnCl2 | 70.0 MG_PER_L | JCM Medium 187 lists 70.0 mg/L ZnCl2. |
| MnCl2 x 4 H2O | 100.0 MG_PER_L | JCM Medium 187 lists 100.0 mg/L MnCl2 x 4 H2O. |
| H3BO3 | 6.0 MG_PER_L | JCM Medium 187 lists 6.0 mg/L H3BO3. |
| CoCl2 x 6 H2O | 190.0 MG_PER_L | JCM Medium 187 lists 190.0 mg/L CoCl2 x 6 H2O. |
| CuCl2 x 2 H2O | 2.0 MG_PER_L | JCM Medium 187 lists 2.0 mg/L CuCl2 x 2 H2O. |
| NiCl2 x 6 H2O | 24.0 MG_PER_L | JCM Medium 187 lists 24.0 mg/L NiCl2 x 6 H2O. |
| Na2MoO4 x 2 H2O | 36.0 MG_PER_L | JCM Medium 187 lists 36.0 mg/L Na2MoO4 x 2 H2O. |
| Distilled water | 1000.0 ML_PER_L | JCM Medium 187 makes Trace element solution up to 1.0 L. |
MediaDive J758 / JCM Medium 758 adds 0.967118 ml/L Trace element solution.
10% CaCl2 x 2 H2O solution
Dose: 1.93424 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| CaCl2 x 2 H2O | 10.0 PERCENT_W_V | MediaDive J758 / JCM Medium 758 specifies 10% CaCl2 x 2 H2O solution as 10.0% w/v. |
MediaDive J758 / JCM Medium 758 adds 1.93424 ml/L 10% CaCl2 x 2 H2O solution.
12.5% Na2S2O3 x 5 H2O solution
Dose: 19.3424 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Na2S2O3 x 5 H2O | 12.5 PERCENT_W_V | MediaDive J758 / JCM Medium 758 specifies 12.5% Na2S2O3 x 5 H2O solution as 12.5% w/v. |
MediaDive J758 / JCM Medium 758 adds 19.3424 ml/L 12.5% Na2S2O3 x 5 H2O solution.
5% Na2S x 9 H2O solution
Dose: 9.67118 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Na2S x 9 H2O | 5.0 PERCENT_W_V | MediaDive J758 / JCM Medium 758 specifies 5% Na2S x 9 H2O solution as 5.0% w/v. |
MediaDive J758 / JCM Medium 758 adds 9.67118 ml/L 5% Na2S x 9 H2O solution.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:17.512320Z | mediadive-import | Imported from MediaDive | Source: JCM, ID: J758 |
| 2026-03-13T06:19:17.833284Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003101 |
| 2026-03-17T06:30:51.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:31.605000+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "DETHIOSULFOVIBRIO II MEDIUM" to "dethiosulfovibrio_ii_medium" for consistent matching |
| 2026-06-05T07:40:58.595732+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 16 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:56.340926+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-11T00:00:00-07:00 | repair_togo_m783_dethiosulfovibrio_score15.py | RESOLVED_JCM_758_DETHIOSULFOVIBRIO_II_MEDIUM | Moved FeCl2 solution, Trace element solution, 10% CaCl2 x 2 H2O, 12.5% Na2S2O3 x 5 H2O, and 5% Na2S x 9 H2O into nested solution entries, restored main distilled water and anaerobic N2 handling, added the pH range, and linked the TOGO M783 source duplicate. |