Overview
- External ontology
- mediadive.medium:J95 (source link unavailable) — RHODOPSEUDOMONAS RUTILA MEDIUM
- Applications
-
- Microbial cultivation
- Notes
- Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=95
Composition
flowchart LR
CultureMech_003307["rhodopseudomonas_rutila_medium"]
ing0_Yeast_extract["Yeast extract"]
CultureMech_003307 --> ing0_Yeast_extract
ing1_Sodium_L_malate["Sodium L-malate"]
CultureMech_003307 --> ing1_Sodium_L_malate
CHEBI_91261["CHEBI:91261"]
ing1_Sodium_L_malate -.-> CHEBI_91261
ing2_Na_glutamate["Na glutamate"]
CultureMech_003307 --> ing2_Na_glutamate
CHEBI_64220["CHEBI:64220"]
ing2_Na_glutamate -.-> CHEBI_64220
ing3_KH2PO4["KH2PO4"]
CultureMech_003307 --> ing3_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing3_KH2PO4 -.-> CHEBI_63036
ing4_NaHCO3["NaHCO3"]
CultureMech_003307 --> ing4_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing4_NaHCO3 -.-> CHEBI_32139
ing5_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_003307 --> ing5_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing5_MgSO4_x_7_H2O -.-> CHEBI_31795
ing6_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_003307 --> ing6_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing6_CaCl2_x_2_H2O -.-> CHEBI_86158
ing7_MnSO4_x_n_H2O["MnSO4 x n H2O"]
CultureMech_003307 --> ing7_MnSO4_x_n_H2O
CHEBI_86360["CHEBI:86360"]
ing7_MnSO4_x_n_H2O -.-> CHEBI_86360
ing8_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_003307 --> ing8_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing8_FeSO4_x_7_H2O -.-> CHEBI_75836
ing9_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_003307 --> ing9_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing9_CoCl2_x_6_H2O -.-> CHEBI_53503
ing10_Thiamine_HCl["Thiamine HCl"]
CultureMech_003307 --> ing10_Thiamine_HCl
CHEBI_49105["CHEBI:49105"]
ing10_Thiamine_HCl -.-> CHEBI_49105
ing11_Nicotinic_acid["Nicotinic acid"]
CultureMech_003307 --> ing11_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing11_Nicotinic_acid -.-> CHEBI_15940
ing12_Biotin["Biotin"]
CultureMech_003307 --> ing12_Biotin
CHEBI_15956["CHEBI:15956"]
ing12_Biotin -.-> CHEBI_15956
Ingredients (13)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Yeast extract | 2 G_PER_L | ||
| 2 |
Sodium L-malate
C4H4O5.2Na 178.051 g/mol
|
2 G_PER_L |
CHEBI:91261
disodium (S)-malate
|
|
| 3 |
Na glutamate
C5H8NO4.Na 169.112 g/mol
|
2 G_PER_L |
CHEBI:64220
monosodium glutamate
|
|
| 4 |
KH2PO4
H2O4P.K 136.084 g/mol
|
1 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 5 |
NaHCO3
CHO3.Na 84.006 g/mol
|
0.5 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 6 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 7 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.1 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 8 |
MnSO4 x n H2O
Mn.O4S 151.001 g/mol
|
0.002 G_PER_L |
CHEBI:86360
manganese(II) sulfate
|
|
| 9 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.0005 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 10 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.0005 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 11 |
Thiamine HCl
C12H17N4OS.Cl.HCl 337.276 g/mol
|
0.001 G_PER_L |
CHEBI:49105
thiamine hydrochloride
|
|
| 12 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
0.001 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 13 |
Biotin
C10H16N2O3S 244.316 g/mol
|
1e-05 G_PER_L |
CHEBI:15956
biotin
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:15.721455Z | mediadive-import | Imported from MediaDive | Source: JCM, ID: J95 |
| 2026-03-13T06:19:19.377900Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003307 |
| 2026-03-17T06:30:03.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:33.325324+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "RHODOPSEUDOMONAS RUTILA MEDIUM" to "rhodopseudomonas_rutila_medium" for consistent matching |
| 2026-06-05T07:40:17.936520+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 11 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:43.186669+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |