hydrogen_oxydizing_medium

CultureMech:003500 bacterial DEFINED LIQUID
Original name: HYDROGEN-OXYDIZING MEDIUM

Overview

External ontology
komodo.medium:1003 (source link unavailable) — HYDROGEN-OXYDIZING MEDIUM
Applications
  • Microbial cultivation
pH
6.0
High-metal flag
True
Notes
Source: KOMODO ModelSEED | ID: 1003 | DSMZ Medium: 1003 (mediadive.medium:1003) | Aerobic: Yes

Composition

flowchart LR
    CultureMech_003500["hydrogen_oxydizing_medium"]
    ing0_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_003500 --> ing0_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing0_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing1_NaS2O3["NaS2O3"]
    CultureMech_003500 --> ing1_NaS2O3
    CHEBI_132112["CHEBI:132112"]
    ing1_NaS2O3 -.-> CHEBI_132112
    ing2_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_003500 --> ing2_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing2_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing3_KCl["KCl"]
    CultureMech_003500 --> ing3_KCl
    CHEBI_32588["CHEBI:32588"]
    ing3_KCl -.-> CHEBI_32588
    ing4_MgCl2["MgCl2"]
    CultureMech_003500 --> ing4_MgCl2
    CHEBI_6636["CHEBI:6636"]
    ing4_MgCl2 -.-> CHEBI_6636
    ing5_MES["MES"]
    CultureMech_003500 --> ing5_MES
    CHEBI_39010["CHEBI:39010"]
    ing5_MES -.-> CHEBI_39010
    ing6_NH4Cl["NH4Cl"]
    CultureMech_003500 --> ing6_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing6_NH4Cl -.-> CHEBI_31206
    ing7_MgCl2_x_H2O["MgCl2 x H2O"]
    CultureMech_003500 --> ing7_MgCl2_x_H2O
    CHEBI_86355["CHEBI:86355"]
    ing7_MgCl2_x_H2O -.-> CHEBI_86355
    ing8_K2HPO4_x_3_H2O["K2HPO4 x 3 H2O"]
    CultureMech_003500 --> ing8_K2HPO4_x_3_H2O
    CHEBI_131527["CHEBI:131527"]
    ing8_K2HPO4_x_3_H2O -.-> CHEBI_131527
    ing9_Na_EDTA_x_2_H2O["Na-EDTA x 2 H2O"]
    CultureMech_003500 --> ing9_Na_EDTA_x_2_H2O
    CHEBI_64758["CHEBI:64758"]
    ing9_Na_EDTA_x_2_H2O -.-> CHEBI_64758
    ing10_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_003500 --> ing10_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing10_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing11_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_003500 --> ing11_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing11_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing12_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_003500 --> ing12_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing12_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing13_ZnCl2["ZnCl2"]
    CultureMech_003500 --> ing13_ZnCl2
    CHEBI_49976["CHEBI:49976"]
    ing13_ZnCl2 -.-> CHEBI_49976
    ing14_AlCl3_x_6_H2O["AlCl3 x 6 H2O"]
    CultureMech_003500 --> ing14_AlCl3_x_6_H2O
    CHEBI_30115["CHEBI:30115"]
    ing14_AlCl3_x_6_H2O -.-> CHEBI_30115
    ing15_Na_tungstate_x_2_H2O["Na-tungstate x 2 H2O"]
    CultureMech_003500 --> ing15_Na_tungstate_x_2_H2O
    ing16_CuCl["CuCl"]
    CultureMech_003500 --> ing16_CuCl
    CHEBI_53472["CHEBI:53472"]
    ing16_CuCl -.-> CHEBI_53472
    ing17_NiSO4_x_6_H2O["NiSO4 x 6 H2O"]
    CultureMech_003500 --> ing17_NiSO4_x_6_H2O
    CHEBI_53001["CHEBI:53001"]
    ing17_NiSO4_x_6_H2O -.-> CHEBI_53001
    ing18_Se_acid["Se-acid"]
    CultureMech_003500 --> ing18_Se_acid
    ing19_HBO3["HBO3"]
    CultureMech_003500 --> ing19_HBO3
    ing20_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_003500 --> ing20_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing20_Na2MoO4_x_2_H2O -.-> CHEBI_75213

Ingredients (21)

# Ingredient Concentration Ontology Notes
1 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
7 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
2 NaS2O3
2Na.O3S2 158.111 g/mol
2 G_PER_L CHEBI:132112
sodium thiosulfate
3 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
40.4 G_PER_L CHEBI:86158
calcium chloride dihydrate
 [Merged 2 duplicates: 0.4, 40.0]
4 KCl
Cl.K 74.551 g/mol
0.48 G_PER_L CHEBI:32588
potassium chloride
5 MgCl2
2Cl.Mg 95.211 g/mol
0.78 G_PER_L CHEBI:6636
magnesium dichloride
6 MES 1.95 G_PER_L CHEBI:39010
MES
7 NH4Cl
Cl.H4N 53.492 g/mol
100 G_PER_L CHEBI:31206
ammonium chloride
8 MgCl2 x H2O
2Cl.H2O.Mg 113.226 g/mol
100 G_PER_L CHEBI:86355
magnesium dichloride monohydrate
9 K2HPO4 x 3 H2O
HO4P.2K 174.174 g/mol
200 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
10 Na-EDTA x 2 H2O
C10H14N2O8.2H2O.2Na 372.238 g/mol
0.5 G_PER_L CHEBI:64758
EDTA disodium salt dihydrate
11 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.15 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
12 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.1 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
13 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.1 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
14 ZnCl2
2Cl.Zn 136.296 g/mol
0.1 G_PER_L CHEBI:49976
zinc dichloride
15 AlCl3 x 6 H2O
AlCl3.6H2O 241.431 g/mol
0.04 G_PER_L CHEBI:30115
aluminium trichloride hexahydrate
16 Na-tungstate x 2 H2O 0.03 G_PER_L
17 CuCl
ClCu 98.999 g/mol
0.02 G_PER_L CHEBI:53472
copper(I) chloride
18 NiSO4 x 6 H2O
Ni.O4S 154.756 g/mol
0.02 G_PER_L CHEBI:53001
nickel sulfate
19 Se-acid 0.01 G_PER_L
20 HBO3 0.01 G_PER_L
21 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.01 G_PER_L CHEBI:75213
sodium molybdate dihydrate

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T01:15:01.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 1003
2026-02-03T11:19:02.965321 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 1003
2026-03-13T03:08:59.637477Z data-quality-cleanup-v1.0 Data quality fixes Merged 1 duplicate ingredient(s)
2026-03-13T06:19:20.191768Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:003500
2026-03-17T06:30:04.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:34.292192+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "HYDROGEN-OXYDIZING MEDIUM" to "hydrogen_oxydizing_medium" for consistent matching
2026-06-05T07:40:18.029290+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 18 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:43.218811+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.