Overview
- External ontology
- komodo.medium:1065 (source link unavailable) — M1-NOCARDIOPSIS ARABIA medium
- Applications
-
- Microbial cultivation
- pH
- 7.2
- Notes
- Source: KOMODO ModelSEED | ID: 1065 | DSMZ Medium: 1065 (mediadive.medium:1065) | Aerobic: No
Composition
flowchart LR
CultureMech_003648["m1_nocardiopsis_arabia_medium"]
ing0_Starch["Starch"]
CultureMech_003648 --> ing0_Starch
CHEBI_28017["CHEBI:28017"]
ing0_Starch -.-> CHEBI_28017
ing1_Yeast_extract["Yeast extract"]
CultureMech_003648 --> ing1_Yeast_extract
ing2_Peptone["Peptone"]
CultureMech_003648 --> ing2_Peptone
ing3_NaCl["NaCl"]
CultureMech_003648 --> ing3_NaCl
CHEBI_26710["CHEBI:26710"]
ing3_NaCl -.-> CHEBI_26710
ing4_Agar["Agar"]
CultureMech_003648 --> ing4_Agar
CHEBI_2509["CHEBI:2509"]
ing4_Agar -.-> CHEBI_2509
ing5_Sea_water["Sea water"]
CultureMech_003648 --> ing5_Sea_water
Ingredients (6)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Starch | 10 G_PER_L |
CHEBI:28017
starch
|
|
| 2 | Yeast extract | 4 G_PER_L | ||
| 3 | Peptone | 2 G_PER_L | ||
| 4 |
NaCl
Cl.Na 58.443 g/mol
|
20 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 5 | Agar | 18 G_PER_L |
CHEBI:2509
agar
|
|
| 6 | Sea water | 1 L | Source batch input: 1000 ml sea water = 1 L. This is an input volume, not a mass concentration, volume percentage or measured final-medium volume. No density or final-volume assumption is made. |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1065 |
| 2026-02-03T11:19:10.108287 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1065 |
| 2026-03-13T06:19:21.351545Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003648 |
| 2026-03-17T06:30:26.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:35.599249+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "M1-NOCARDIOPSIS ARABIA medium" to "m1_nocardiopsis_arabia_medium" for consistent matching |
| 2026-06-05T07:40:18.673900+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-10-08T06:29:49.318246+00:00 | codex | CURATED_KOMODO_CONCENTRATION_SOURCE_EVIDENCE | Exact medium/source membership, ingredient inventory/forms, physical-state conditions, literal snippets, and arithmetic checked. Stock boundaries, source-only rows, preparation context, and variants remain explicit follow-up tasks; secondary chemical mappings unchanged. KOMODO accession 1065 is mapped to the same DSMZ accession by https://komodo.modelseed.org/servlet/KomodoTomcatServerSideUtilitiesModelSeed?MediaList; mapping response SHA256=d8259d98e6dbffdf6961a1ab92bc86f3567d5d96de352bfa079edb2a91e9580a. The mapping supports identity only, not ingredient quantities or variants. |
| 2026-10-08T07:20:58.579071+00:00 | codex | CORRECTED_DSMZ803_1046_1065_WATER_INPUT_UNITS | Original DSMZ PDF and exact linked API recipe independently inspected. Preserved prior evidence/history, identifiers, non-water amounts, preparation, chemical mappings and parent/variant links. No final-volume, density, stock dilution or growth inference. |