Overview
- External ontology
- komodo.medium:1084 (source link unavailable) — METHERMICOCCUS medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 6.0, 'max': 6.5}
- Notes
- Source: KOMODO ModelSEED | ID: 1084 | DSMZ Medium: 1084 (mediadive.medium:1084) | Aerobic: Yes
Composition
flowchart LR
CultureMech_003736["methermicoccus_medium"]
ing0_KCl["KCl"]
CultureMech_003736 --> ing0_KCl
CHEBI_32588["CHEBI:32588"]
ing0_KCl -.-> CHEBI_32588
ing1_NH4Cl["NH4Cl"]
CultureMech_003736 --> ing1_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing1_NH4Cl -.-> CHEBI_31206
ing2_K2HPO4["K2HPO4"]
CultureMech_003736 --> ing2_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing2_K2HPO4 -.-> CHEBI_131527
ing3_NaCl["NaCl"]
CultureMech_003736 --> ing3_NaCl
CHEBI_26710["CHEBI:26710"]
ing3_NaCl -.-> CHEBI_26710
ing4_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_003736 --> ing4_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing4_MgCl2_x_6_H2O -.-> CHEBI_86345
ing5_Yeast_extract["Yeast extract"]
CultureMech_003736 --> ing5_Yeast_extract
ing6_Sodium_resazurin["Sodium resazurin"]
CultureMech_003736 --> ing6_Sodium_resazurin
CHEBI_8806["CHEBI:8806"]
ing6_Sodium_resazurin -.-> CHEBI_8806
ing7_Na2CO3["Na2CO3"]
CultureMech_003736 --> ing7_Na2CO3
CHEBI_29377["CHEBI:29377"]
ing7_Na2CO3 -.-> CHEBI_29377
ing8_Methanol["Methanol"]
CultureMech_003736 --> ing8_Methanol
CHEBI_17790["CHEBI:17790"]
ing8_Methanol -.-> CHEBI_17790
ing9_2_Mercaptoethanesulfonate["2-Mercaptoethanesulfonate"]
CultureMech_003736 --> ing9_2_Mercaptoethanesulfonate
CHEBI_17905["CHEBI:17905"]
ing9_2_Mercaptoethanesulfonate -.-> CHEBI_17905
ing10_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
CultureMech_003736 --> ing10_L_Cysteine_HCl_x_H2O
CHEBI_91248["CHEBI:91248"]
ing10_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248
ing11_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_003736 --> ing11_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing11_Na2S_x_9_H2O -.-> CHEBI_76209
ing12_Sludge["Sludge"]
CultureMech_003736 --> ing12_Sludge
Ingredients (13)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
KCl
Cl.K 74.551 g/mol
|
0.333007 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 2 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.244858 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 3 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.195886 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 4 |
NaCl
Cl.Na 58.443 g/mol
|
23.5064 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 5 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
9.99021 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 6 | Yeast extract | 5.95886 G_PER_L | [Merged 2 duplicates: 1.95886, 4.0] | |
| 7 |
Sodium resazurin
C12H7NO4 229.191 g/mol
|
0.000489716 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 8 |
Na2CO3
CO3.2Na 105.988 g/mol
|
0.979432 G_PER_L |
CHEBI:29377
sodium carbonate
|
|
| 9 |
Methanol
CH4O 32.042 g/mol
|
12.4114 G_PER_L |
CHEBI:17790
methanol
|
|
| 10 |
2-Mercaptoethanesulfonate
C2H6O3S2 142.201 g/mol
|
2.44858 G_PER_L |
CHEBI:17905
coenzyme M
|
|
| 11 |
L-Cysteine HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
|
0.29383 G_PER_L |
CHEBI:91248
L-cysteine hydrochloride hydrate
|
|
| 12 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
0.29383 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
|
| 13 | Sludge | 1000 G_PER_L |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1084 |
| 2026-02-03T11:18:55.724381 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1084 |
| 2026-03-13T03:08:41.549288Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:19:21.783082Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003736 |
| 2026-03-17T06:29:43.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:36.064876+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "METHERMICOCCUS medium" to "methermicoccus_medium" for consistent matching |
| 2026-05-20T06:01:56.678250+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '6.0-6.5' -> {'min': 6.0, 'max': 6.5} |
| 2026-06-05T07:41:32.980259+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 10 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:47:07.503717+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |