Overview
- External ontology
- komodo.medium:1098 (source link unavailable) — ARC51 MEDIUM
- Applications
-
- Microbial cultivation
- pH
- 6.5
- Notes
- Source: KOMODO ModelSEED | ID: 1098 | DSMZ Medium: 1098 (mediadive.medium:1098) | Aerobic: Yes
Composition
flowchart LR
CultureMech_003750["arc51_medium"]
ing0_Sea_Salt["Sea Salt"]
CultureMech_003750 --> ing0_Sea_Salt
ing1_NH4Cl["NH4Cl"]
CultureMech_003750 --> ing1_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing1_NH4Cl -.-> CHEBI_31206
ing2_KH2PO4["KH2PO4"]
CultureMech_003750 --> ing2_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing2_KH2PO4 -.-> CHEBI_63036
ing3_Na_acetate["Na-acetate"]
CultureMech_003750 --> ing3_Na_acetate
CHEBI_32954["CHEBI:32954"]
ing3_Na_acetate -.-> CHEBI_32954
ing4_Yeast_extract["Yeast extract"]
CultureMech_003750 --> ing4_Yeast_extract
ing5_Sodium_resazurin["Sodium resazurin"]
CultureMech_003750 --> ing5_Sodium_resazurin
CHEBI_8806["CHEBI:8806"]
ing5_Sodium_resazurin -.-> CHEBI_8806
ing6_NaHCO3["NaHCO3"]
CultureMech_003750 --> ing6_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing6_NaHCO3 -.-> CHEBI_32139
ing7_2_Mercaptoethanesulfonate["2-Mercaptoethanesulfonate"]
CultureMech_003750 --> ing7_2_Mercaptoethanesulfonate
CHEBI_17905["CHEBI:17905"]
ing7_2_Mercaptoethanesulfonate -.-> CHEBI_17905
ing8_Na2S2O3_x_5_H2O["Na2S2O3 x 5 H2O"]
CultureMech_003750 --> ing8_Na2S2O3_x_5_H2O
CHEBI_32150["CHEBI:32150"]
ing8_Na2S2O3_x_5_H2O -.-> CHEBI_32150
ing9_DL_Dithiothreitol["DL-Dithiothreitol"]
CultureMech_003750 --> ing9_DL_Dithiothreitol
CHEBI_18320["CHEBI:18320"]
ing9_DL_Dithiothreitol -.-> CHEBI_18320
ing10_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_003750 --> ing10_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing10_MgSO4_x_7_H2O -.-> CHEBI_31795
ing11_NaCl["NaCl"]
CultureMech_003750 --> ing11_NaCl
CHEBI_26710["CHEBI:26710"]
ing11_NaCl -.-> CHEBI_26710
ing12_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_003750 --> ing12_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing12_CaCl2_x_2_H2O -.-> CHEBI_86158
ing13_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
CultureMech_003750 --> ing13_CuSO4_x_5_H2O
CHEBI_31440["CHEBI:31440"]
ing13_CuSO4_x_5_H2O -.-> CHEBI_31440
ing14_AlK_SO4_2_x_12_H2O["AlK(SO4)2 x 12 H2O"]
CultureMech_003750 --> ing14_AlK_SO4_2_x_12_H2O
CHEBI_86465["CHEBI:86465"]
ing14_AlK_SO4_2_x_12_H2O -.-> CHEBI_86465
ing15_H3BO3["H3BO3"]
CultureMech_003750 --> ing15_H3BO3
CHEBI_33118["CHEBI:33118"]
ing15_H3BO3 -.-> CHEBI_33118
ing16_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_003750 --> ing16_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing16_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing17__NH4_2Ni_SO4_2_x_6_H2O["(NH4)2Ni(SO4)2 x 6 H2O"]
CultureMech_003750 --> ing17__NH4_2Ni_SO4_2_x_6_H2O
CHEBI_86149["CHEBI:86149"]
ing17__NH4_2Ni_SO4_2_x_6_H2O -.-> CHEBI_86149
ing18_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
CultureMech_003750 --> ing18_Na2WO4_x_2_H2O
CHEBI_63939["CHEBI:63939"]
ing18_Na2WO4_x_2_H2O -.-> CHEBI_63939
ing19_Na2SeO4["Na2SeO4"]
CultureMech_003750 --> ing19_Na2SeO4
CHEBI_77775["CHEBI:77775"]
ing19_Na2SeO4 -.-> CHEBI_77775
ing20_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
CultureMech_003750 --> ing20_p_Aminobenzoic_acid
CHEBI_30753["CHEBI:30753"]
ing20_p_Aminobenzoic_acid -.-> CHEBI_30753
ing21_D_____biotin["D-(+)-biotin"]
CultureMech_003750 --> ing21_D_____biotin
CHEBI_15956["CHEBI:15956"]
ing21_D_____biotin -.-> CHEBI_15956
ing22_Calcium_pantothenate["Calcium pantothenate"]
CultureMech_003750 --> ing22_Calcium_pantothenate
CHEBI_31345["CHEBI:31345"]
ing22_Calcium_pantothenate -.-> CHEBI_31345
Ingredients (23)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Sea Salt | 34.9301 G_PER_L | ||
| 2 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.0998004 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 3 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.0499002 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 4 |
Na-acetate
C2H3O2.Na 82.034 g/mol
|
1.59681 G_PER_L |
CHEBI:32954
sodium acetate
|
|
| 5 | Yeast extract | 0.0998004 G_PER_L | ||
| 6 |
Sodium resazurin
C12H7NO4 229.191 g/mol
|
0.000499002 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 7 |
NaHCO3
CHO3.Na 84.006 g/mol
|
1.99601 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 8 |
2-Mercaptoethanesulfonate
C2H6O3S2 142.201 g/mol
|
0.139721 G_PER_L |
CHEBI:17905
coenzyme M
|
|
| 9 |
Na2S2O3 x 5 H2O
5H2O.2Na.O3S2 248.186 g/mol
|
2.49501 G_PER_L |
CHEBI:32150
sodium thiosulfate pentahydrate
|
|
| 10 |
DL-Dithiothreitol
C4H10O2S2 154.256 g/mol
|
0.299401 G_PER_L |
CHEBI:18320
1,4-dithiothreitol
|
|
| 11 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
30 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 12 |
NaCl
Cl.Na 58.443 g/mol
|
10 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 13 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
1 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 14 |
CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
|
0.1 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
|
| 15 |
AlK(SO4)2 x 12 H2O
Al.12H2O.K.2O4S 474.386 g/mol
|
0.18 G_PER_L |
CHEBI:86465
potassium aluminium sulfate dodecahydrate
|
|
| 16 |
H3BO3
H3BO3 61.833 g/mol
|
0.1 G_PER_L |
CHEBI:33118
boric acid
|
|
| 17 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.1 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 18 |
(NH4)2Ni(SO4)2 x 6 H2O
6H2O.2H4N.Ni.2O4S 394.987 g/mol
|
2.8 G_PER_L |
CHEBI:86149
ammonium nickel sulfate hexahydrate
|
|
| 19 |
Na2WO4 x 2 H2O
2H2O.2Na.O4W 329.846 g/mol
|
0.1 G_PER_L |
CHEBI:63939
sodium tungstate dihydrate
|
|
| 20 |
Na2SeO4
2Na.O4Se 188.936 g/mol
|
0.1 G_PER_L |
CHEBI:77775
sodium selenate
|
|
| 21 |
p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
|
0.08 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
|
| 22 |
D-(+)-biotin
C10H16N2O3S 244.316 g/mol
|
0.02 G_PER_L |
CHEBI:15956
biotin
|
|
| 23 |
Calcium pantothenate
2C9H16NO5.Ca 476.536 g/mol
|
0.1 G_PER_L |
CHEBI:31345
Calcium pantothenate
|
Solutions
Wolfe's mineral elixir
Dose: 1 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| MnSO4 x H2O | 5 G_PER_L | |
| FeSO4 x 7 H2O | 1 G_PER_L | |
| CoCl2 x 6 H2O | 1.8 G_PER_L | |
| ZnSO4 x 7 H2O | 1.8 G_PER_L |
Seven vitamins solution
Dose: 1 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Vitamin B12 | 0.1 G_PER_L | |
| Nicotinic acid | 0.2 G_PER_L | |
| Pyridoxine hydrochloride | 0.3 G_PER_L | |
| Thiamine-HCl x 2 H2O | 0.2 G_PER_L |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1098 |
| 2026-02-03T11:19:14.350398 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1098 |
| 2026-03-13T06:19:21.913138Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003750 |
| 2026-03-17T06:30:40.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:36.213979+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "ARC51 MEDIUM" to "arc51_medium" for consistent matching |
| 2026-06-05T07:40:49.451582+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 27 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.533857+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:53.432868+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 5 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-15T00:17:28.656824+00:00 | apply_cocktail_nesting.py | NESTED_FLATTENED_COCKTAIL | Moved 8 stock-strength component(s) out of ingredients into 2 solution(s): 4 -> "Wolfe's mineral elixir" @ 1 ml/l; 4 -> 'Seven vitamins solution' @ 1 ml/l. Each moved component matched the MediaDive stock by name AND value; bulk ingredients sharing a name were left in place (#150). |
| 2026-08-15T05:34:48.269208+00:00 | promote_komodo_volume_candidates.py | ASSERTED_VOLUME_FROM_COMPOSITION_MATCH | This record reproduces MediaDive medium 1098 ('ARCHAEOGLOBUS INFECTUS MEDIUM') across 31 shared compounds at 100% identical values. That identifies the medium despite the name difference, so its stated addition volume is now asserted rather than proposed (#262). |