Overview
- External ontology
- komodo.medium:1132.1 (source link unavailable) — For DSM 22980
- Applications
-
- Microbial cultivation
- pH
- 6.8
- Notes
- Source: KOMODO ModelSEED | ID: 1132.1 | DSMZ Medium: 1132 (mediadive.medium:1132) | Aerobic: No
Composition
flowchart LR
CultureMech_003841["for_dsm_22980"]
ing0_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_003841 --> ing0_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing0_MgSO4_x_7_H2O -.-> CHEBI_31795
ing1_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_003841 --> ing1_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing1_CaCl2_x_2_H2O -.-> CHEBI_86158
ing2_KNO3["KNO3"]
CultureMech_003841 --> ing2_KNO3
CHEBI_63043["CHEBI:63043"]
ing2_KNO3 -.-> CHEBI_63043
ing3_HEPES_buffer["HEPES buffer"]
CultureMech_003841 --> ing3_HEPES_buffer
CHEBI_46756["CHEBI:46756"]
ing3_HEPES_buffer -.-> CHEBI_46756
ing4_Fe_III_NH4_EDTA["Fe(III)NH4-EDTA"]
CultureMech_003841 --> ing4_Fe_III_NH4_EDTA
ing5_Methanol["Methanol"]
CultureMech_003841 --> ing5_Methanol
CHEBI_17790["CHEBI:17790"]
ing5_Methanol -.-> CHEBI_17790
ing6_HCl["HCl"]
CultureMech_003841 --> ing6_HCl
CHEBI_17883["CHEBI:17883"]
ing6_HCl -.-> CHEBI_17883
ing7_FeCl2_x_4_H2O["FeCl2 x 4 H2O"]
CultureMech_003841 --> ing7_FeCl2_x_4_H2O
CHEBI_86249["CHEBI:86249"]
ing7_FeCl2_x_4_H2O -.-> CHEBI_86249
ing8_ZnCl2["ZnCl2"]
CultureMech_003841 --> ing8_ZnCl2
CHEBI_49976["CHEBI:49976"]
ing8_ZnCl2 -.-> CHEBI_49976
ing9_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_003841 --> ing9_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing9_MnCl2_x_4_H2O -.-> CHEBI_86368
ing10_H3BO3["H3BO3"]
CultureMech_003841 --> ing10_H3BO3
CHEBI_33118["CHEBI:33118"]
ing10_H3BO3 -.-> CHEBI_33118
ing11_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_003841 --> ing11_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing11_CoCl2_x_6_H2O -.-> CHEBI_53503
ing12_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_003841 --> ing12_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing12_CuCl2_x_2_H2O -.-> CHEBI_86318
ing13_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_003841 --> ing13_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing13_NiCl2_x_6_H2O -.-> CHEBI_34887
ing14_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_003841 --> ing14_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing14_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing15_Na2HPO4["Na2HPO4"]
CultureMech_003841 --> ing15_Na2HPO4
CHEBI_34683["CHEBI:34683"]
ing15_Na2HPO4 -.-> CHEBI_34683
ing16_KH2PO4["KH2PO4"]
CultureMech_003841 --> ing16_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing16_KH2PO4 -.-> CHEBI_63036
Ingredients (17)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
1 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 2 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.2 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 3 |
KNO3
K.NO3 101.102 g/mol
|
0.05 G_PER_L |
CHEBI:63043
potassium nitrate
|
|
| 4 | HEPES buffer | 0.4766 G_PER_L |
CHEBI:46756
HEPES
|
|
| 5 | Fe(III)NH4-EDTA | 1 G_PER_L | ||
| 6 |
Methanol
CH4O 32.042 g/mol
|
0.2376 G_PER_L |
CHEBI:17790
methanol
|
|
| 7 |
HCl
HCl 36.461 g/mol
|
2.5 G_PER_L |
CHEBI:17883
hydrogen chloride
|
|
| 8 |
FeCl2 x 4 H2O
Cl2Fe.4H2O 198.811 g/mol
|
1.5 G_PER_L |
CHEBI:86249
iron dichloride tetrahydrate
|
|
| 9 |
ZnCl2
2Cl.Zn 136.296 g/mol
|
0.07 G_PER_L |
CHEBI:49976
zinc dichloride
|
|
| 10 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.1 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 11 |
H3BO3
H3BO3 61.833 g/mol
|
0.006 G_PER_L |
CHEBI:33118
boric acid
|
|
| 12 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.19 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 13 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.002 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 14 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.024 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 15 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.036 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 16 |
Na2HPO4
HO4P.2Na 141.958 g/mol
|
36 G_PER_L |
CHEBI:34683
disodium hydrogenphosphate
|
|
| 17 |
KH2PO4
H2O4P.K 136.084 g/mol
|
14 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-06-14T05:58:58.561437+00:00 | idnf-grounding-fix-v1.0 | Fixed ID_NOT_FOUND term groundings | Absent/obsolete CHEBI term ids fixed - 1 re-grounded to the correct CHEBI, 0 de-grounded (mixture or unverifiable). |
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1132.1 |
| 2026-02-03T11:19:15.117451 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1132 |
| 2026-03-13T06:19:22.653337Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003841 |
| 2026-03-17T06:30:42.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:37.072713+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "For DSM 22980" to "for_dsm_22980" for consistent matching |
| 2026-06-05T07:41:03.867358+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 14 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.869420+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:58.212752+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-13T00:00:00-07:00 | repair_komodo_1132_lc2_score10.py | RESOLVED_KOMODO_1132_LC2_TOPOLOGY | KOMODO Medium 1132.1 applies LC 2 to DSM 22980. |