Overview
- External ontology
- komodo.medium:1169 (source link unavailable) — SEAWATER YPG
- Applications
-
- Microbial cultivation
- Notes
- Source: KOMODO ModelSEED | ID: 1169 | DSMZ Medium: 1169 (mediadive.medium:1169) | Aerobic: No
Composition
flowchart LR
CultureMech_003887["seawater_ypg"]
ing0_Yeast_extract["Yeast extract"]
CultureMech_003887 --> ing0_Yeast_extract
ing1_Peptone["Peptone"]
CultureMech_003887 --> ing1_Peptone
ing2_NaCl["NaCl"]
CultureMech_003887 --> ing2_NaCl
CHEBI_26710["CHEBI:26710"]
ing2_NaCl -.-> CHEBI_26710
ing3_Glucose["Glucose"]
CultureMech_003887 --> ing3_Glucose
CHEBI_17234["CHEBI:17234"]
ing3_Glucose -.-> CHEBI_17234
ing4_Agar["Agar"]
CultureMech_003887 --> ing4_Agar
CHEBI_2509["CHEBI:2509"]
ing4_Agar -.-> CHEBI_2509
Ingredients (5)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Yeast extract | 5 G_PER_L | ||
| 2 | Peptone | 10 G_PER_L | ||
| 3 |
NaCl
Cl.Na 58.443 g/mol
|
20 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 4 |
Glucose
C6H12O6 180.156 g/mol
|
10 G_PER_L |
CHEBI:17234
glucose
|
|
| 5 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
(for solid medium) |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1169 |
| 2026-02-03T11:18:57.378724 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1169 |
| 2026-03-13T06:19:23.022674Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003887 |
| 2026-03-17T06:29:47.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:37.505513+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "SEAWATER YPG" to "seawater_ypg" for consistent matching |
| 2026-06-05T07:40:19.526876+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-10-08T08:10:31.707883+00:00 | codex | CURATED_KOMODO_CONCENTRATION_SOURCE_EVIDENCE | Exact medium/source membership, ingredient inventory/forms, physical-state conditions, literal snippets, and arithmetic checked. Stock boundaries, source-only rows, preparation context, and variants remain explicit follow-up tasks; secondary chemical mappings unchanged. KOMODO accession 1169 is mapped to the same DSMZ accession by https://komodo.modelseed.org/servlet/KomodoTomcatServerSideUtilitiesModelSeed?MediaList; mapping response SHA256=d8259d98e6dbffdf6961a1ab92bc86f3567d5d96de352bfa079edb2a91e9580a. The mapping supports identity only, not ingredient quantities or variants. |