methylonatrum_medium_replace_methanol_with_sodium_acetate

CultureMech:003888 bacterial DEFINED LIQUID
Original name: METHYLONATRUM MEDIUM_replace_Methanol_with_Sodium acetate

Overview

External ontology
komodo.medium:1170_replace_Methanol_with_Sodium acetate (source link unavailable) — METHYLONATRUM MEDIUM_replace_Methanol_with_Sodium acetate
Applications
  • Microbial cultivation
pH
10.0
Notes
Source: KOMODO ModelSEED | ID: 1170_replace_Methanol_with_Sodium acetate | DSMZ Medium: 1170 (mediadive.medium:1170) | Aerobic: No

Composition

flowchart LR
    CultureMech_003888["methylonatrum_medium_replace_methanol_with_sodium_acetate"]
    ing0_K2HPO4["K2HPO4"]
    CultureMech_003888 --> ing0_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing0_K2HPO4 -.-> CHEBI_131527
    ing1_KNO3["KNO3"]
    CultureMech_003888 --> ing1_KNO3
    CHEBI_63043["CHEBI:63043"]
    ing1_KNO3 -.-> CHEBI_63043
    ing2_Na2CO3["Na2CO3"]
    CultureMech_003888 --> ing2_Na2CO3
    CHEBI_29377["CHEBI:29377"]
    ing2_Na2CO3 -.-> CHEBI_29377
    ing3_Methanol["Methanol"]
    CultureMech_003888 --> ing3_Methanol
    CHEBI_17790["CHEBI:17790"]
    ing3_Methanol -.-> CHEBI_17790
    ing4_NaCl["NaCl"]
    CultureMech_003888 --> ing4_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing4_NaCl -.-> CHEBI_26710
    ing5_NH4Cl["NH4Cl"]
    CultureMech_003888 --> ing5_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing5_NH4Cl -.-> CHEBI_31206
    ing6_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_003888 --> ing6_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing6_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing7_NaS2O3_x_5_H2O["NaS2O3 x 5 H2O"]
    CultureMech_003888 --> ing7_NaS2O3_x_5_H2O
    CHEBI_32150["CHEBI:32150"]
    ing7_NaS2O3_x_5_H2O -.-> CHEBI_32150
    ing8_Vitamin_B12["Vitamin B12"]
    CultureMech_003888 --> ing8_Vitamin_B12
    CHEBI_176843["CHEBI:176843"]
    ing8_Vitamin_B12 -.-> CHEBI_176843
    ing9_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_003888 --> ing9_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing9_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing10_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_003888 --> ing10_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing10_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing11_H3BO3["H3BO3"]
    CultureMech_003888 --> ing11_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing11_H3BO3 -.-> CHEBI_33118
    ing12_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_003888 --> ing12_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing12_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing13_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_003888 --> ing13_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing13_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing14_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_003888 --> ing14_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing14_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing15_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_003888 --> ing15_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing15_Na2MoO4_x_2_H2O -.-> CHEBI_75213

Ingredients (16)

# Ingredient Concentration Ontology Notes
1 K2HPO4
HO4P.2K 174.174 g/mol
1 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
2 KNO3
K.NO3 101.102 g/mol
1 G_PER_L CHEBI:63043
potassium nitrate
3 Na2CO3
CO3.2Na 105.988 g/mol
11 G_PER_L CHEBI:29377
sodium carbonate
4 Methanol
CH4O 32.042 g/mol
1.584 G_PER_L CHEBI:17790
methanol
5 NaCl
Cl.Na 58.443 g/mol
18 G_PER_L CHEBI:26710
sodium chloride
6 NH4Cl
Cl.H4N 53.492 g/mol
0.16 G_PER_L CHEBI:31206
ammonium chloride
7 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.24 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
8 NaS2O3 x 5 H2O
5H2O.2Na.O3S2 248.186 g/mol
0.024 G_PER_L CHEBI:32150
sodium thiosulfate pentahydrate
9 Vitamin B12 0.1 G_PER_L CHEBI:176843
vitamin B12
10 ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
0.1 G_PER_L CHEBI:32312
zinc sulfate heptahydrate
11 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.03 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
12 H3BO3
H3BO3 61.833 g/mol
0.3 G_PER_L CHEBI:33118
boric acid
13 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.2 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
14 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
0.01 G_PER_L CHEBI:86318
copper(II) chloride dihydrate
15 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.02 G_PER_L CHEBI:34887
nickel dichloride
16 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.03 G_PER_L CHEBI:75213
sodium molybdate dihydrate

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T01:15:01.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 1170_replace_Methanol_with_Sodium acetate
2026-02-03T11:19:14.613330 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 1170
2026-03-13T06:19:23.028849Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:003888
2026-03-17T06:30:41.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:37.512719+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "METHYLONATRUM MEDIUM_replace_Methanol_with_Sodium acetate" to "methylonatrum_medium_replace_methanol_with_sodium_acetate" for consistent matching
2026-06-05T07:41:33.263225+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 15 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:37:35.557531+00:00 primary-term-regrounding-v1.0 Re-grounded wrong primary term id (OAK-verified) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-06-10T07:47:07.611069+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 5 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.