Overview
- External ontology
- komodo.medium:1188 (source link unavailable) — SYPC medium
- Applications
-
- Microbial cultivation
- pH
- 7.5
- Notes
- Source: KOMODO ModelSEED | ID: 1188 | DSMZ Medium: 1188 (mediadive.medium:1188) | Aerobic: No
Composition
flowchart LR
CultureMech_003908["sypc_medium"]
ing0_Sea_Salt["Sea Salt"]
CultureMech_003908 --> ing0_Sea_Salt
ing1_Yeast_extract["Yeast extract"]
CultureMech_003908 --> ing1_Yeast_extract
ing2_Trypticase_peptone["Trypticase peptone"]
CultureMech_003908 --> ing2_Trypticase_peptone
ing3_Cellobiose["Cellobiose"]
CultureMech_003908 --> ing3_Cellobiose
CHEBI_17057["CHEBI:17057"]
ing3_Cellobiose -.-> CHEBI_17057
ing4_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_003908 --> ing4_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing4_MgSO4_x_7_H2O -.-> CHEBI_31795
ing5_NaCl["NaCl"]
CultureMech_003908 --> ing5_NaCl
CHEBI_26710["CHEBI:26710"]
ing5_NaCl -.-> CHEBI_26710
ing6_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_003908 --> ing6_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing6_CaCl2_x_2_H2O -.-> CHEBI_86158
ing7_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
CultureMech_003908 --> ing7_CuSO4_x_5_H2O
CHEBI_31440["CHEBI:31440"]
ing7_CuSO4_x_5_H2O -.-> CHEBI_31440
ing8_AlK_SO4_2_x_12_H2O["AlK(SO4)2 x 12 H2O"]
CultureMech_003908 --> ing8_AlK_SO4_2_x_12_H2O
CHEBI_86465["CHEBI:86465"]
ing8_AlK_SO4_2_x_12_H2O -.-> CHEBI_86465
ing9_H3BO3["H3BO3"]
CultureMech_003908 --> ing9_H3BO3
CHEBI_33118["CHEBI:33118"]
ing9_H3BO3 -.-> CHEBI_33118
ing10_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_003908 --> ing10_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing10_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing11__NH4_2Ni_SO4_2_x_6_H2O["(NH4)2Ni(SO4)2 x 6 H2O"]
CultureMech_003908 --> ing11__NH4_2Ni_SO4_2_x_6_H2O
CHEBI_86149["CHEBI:86149"]
ing11__NH4_2Ni_SO4_2_x_6_H2O -.-> CHEBI_86149
ing12_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
CultureMech_003908 --> ing12_Na2WO4_x_2_H2O
CHEBI_63939["CHEBI:63939"]
ing12_Na2WO4_x_2_H2O -.-> CHEBI_63939
ing13_Na2SeO4["Na2SeO4"]
CultureMech_003908 --> ing13_Na2SeO4
CHEBI_77775["CHEBI:77775"]
ing13_Na2SeO4 -.-> CHEBI_77775
Ingredients (14)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Sea Salt | 34.965 G_PER_L | ||
| 2 | Yeast extract | 0.999001 G_PER_L | ||
| 3 | Trypticase peptone | 0.499501 G_PER_L | ||
| 4 |
Cellobiose
C12H22O11 342.297 g/mol
|
1.998 G_PER_L |
CHEBI:17057
cellobiose
|
|
| 5 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
30 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 6 |
NaCl
Cl.Na 58.443 g/mol
|
10 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 7 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
1 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 8 |
CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
|
0.1 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
|
| 9 |
AlK(SO4)2 x 12 H2O
Al.12H2O.K.2O4S 474.386 g/mol
|
0.18 G_PER_L |
CHEBI:86465
potassium aluminium sulfate dodecahydrate
|
|
| 10 |
H3BO3
H3BO3 61.833 g/mol
|
0.1 G_PER_L |
CHEBI:33118
boric acid
|
|
| 11 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.1 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 12 |
(NH4)2Ni(SO4)2 x 6 H2O
6H2O.2H4N.Ni.2O4S 394.987 g/mol
|
2.8 G_PER_L |
CHEBI:86149
ammonium nickel sulfate hexahydrate
|
|
| 13 |
Na2WO4 x 2 H2O
2H2O.2Na.O4W 329.846 g/mol
|
0.1 G_PER_L |
CHEBI:63939
sodium tungstate dihydrate
|
|
| 14 |
Na2SeO4
2Na.O4Se 188.936 g/mol
|
0.1 G_PER_L |
CHEBI:77775
sodium selenate
|
Solutions
Wolfe's mineral elixir
| Ingredient | Concentration | Notes |
|---|---|---|
| MnSO4 x H2O | 5 G_PER_L | |
| FeSO4 x 7 H2O | 1 G_PER_L | |
| CoCl2 x 6 H2O | 1.8 G_PER_L | |
| ZnSO4 x 7 H2O | 1.8 G_PER_L |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1188 |
| 2026-02-03T11:19:13.569118 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1188 |
| 2026-03-13T06:19:23.153497Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003908 |
| 2026-03-17T06:30:38.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:37.657910+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "SYPC medium" to "sypc_medium" for consistent matching |
| 2026-06-05T07:41:48.600192+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 14 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:35.925699+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:47:12.441650+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-15T00:17:31.876167+00:00 | apply_cocktail_nesting.py | NESTED_FLATTENED_COCKTAIL | Moved 4 stock-strength component(s) out of ingredients into 1 solution(s): 4 -> "Wolfe's mineral elixir" @ 1 ml/l. Each moved component matched the MediaDive stock by name AND value; bulk ingredients sharing a name were left in place (#150). |
| 2026-08-15T05:57:33.814589+00:00 | promote_komodo_volume_candidates.py | SHARPENED_VOLUME_COUNTEREVIDENCE | This record reproduces MediaDive medium 1188 ('SPIROCHAETA CELLOBIOSIPHILA MEDIUM') across 18 shared compounds at 100% identical values, 4 of them from that medium's main solution. That is short of the exact agreement required to assert the volume, so it stays a candidate (#262). |