Overview
- External ontology
- komodo.medium:1233 (source link unavailable) — CALDICOPROBACTER medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.3, 'max': 7.5}
- Notes
- Source: KOMODO ModelSEED | ID: 1233 | DSMZ Medium: 1233 (mediadive.medium:1233) | Aerobic: Yes
Composition
flowchart LR
CultureMech_003989["caldicoprobacter_medium"]
ing0_NaCl["NaCl"]
CultureMech_003989 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_KCl["KCl"]
CultureMech_003989 --> ing1_KCl
CHEBI_32588["CHEBI:32588"]
ing1_KCl -.-> CHEBI_32588
ing2_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_003989 --> ing2_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing2_MgCl2_x_6_H2O -.-> CHEBI_86345
ing3_NH4Cl["NH4Cl"]
CultureMech_003989 --> ing3_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing3_NH4Cl -.-> CHEBI_31206
ing4_HEPES["HEPES"]
CultureMech_003989 --> ing4_HEPES
CHEBI_46756["CHEBI:46756"]
ing4_HEPES -.-> CHEBI_46756
ing5_Na2HPO4_x_7_H2O["Na2HPO4 x 7 H2O"]
CultureMech_003989 --> ing5_Na2HPO4_x_7_H2O
CHEBI_34683["CHEBI:34683"]
ing5_Na2HPO4_x_7_H2O -.-> CHEBI_34683
ing6_Fe_NH4_2_SO4_2_x_6_H2O["Fe(NH4)2(SO4)2 x 6 H2O"]
CultureMech_003989 --> ing6_Fe_NH4_2_SO4_2_x_6_H2O
CHEBI_76181["CHEBI:76181"]
ing6_Fe_NH4_2_SO4_2_x_6_H2O -.-> CHEBI_76181
ing7_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_003989 --> ing7_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing7_CaCl2_x_2_H2O -.-> CHEBI_86158
ing8_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_003989 --> ing8_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing8_MnCl2_x_4_H2O -.-> CHEBI_86368
ing9_Yeast_extract["Yeast extract"]
CultureMech_003989 --> ing9_Yeast_extract
ing10_Tryptone["Tryptone"]
CultureMech_003989 --> ing10_Tryptone
ing11_Sodium_resazurin["Sodium resazurin"]
CultureMech_003989 --> ing11_Sodium_resazurin
CHEBI_8806["CHEBI:8806"]
ing11_Sodium_resazurin -.-> CHEBI_8806
ing12_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
CultureMech_003989 --> ing12_L_Cysteine_HCl_x_H2O
CHEBI_91248["CHEBI:91248"]
ing12_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248
ing13_D_Glucose["D-Glucose"]
CultureMech_003989 --> ing13_D_Glucose
CHEBI_17634["CHEBI:17634"]
ing13_D_Glucose -.-> CHEBI_17634
Ingredients (14)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
0.496524 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 2 |
KCl
Cl.K 74.551 g/mol
|
0.19861 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 3 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
0.178749 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 4 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.0993049 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 5 | HEPES | 4.76663 G_PER_L |
CHEBI:46756
HEPES
|
|
| 6 |
Na2HPO4 x 7 H2O
HO4P.2Na 141.958 g/mol
|
0.0536246 G_PER_L |
CHEBI:34683
disodium hydrogenphosphate
|
|
| 7 |
Fe(NH4)2(SO4)2 x 6 H2O
Fe.6H2O.2H4N.2O4S 392.139 g/mol
|
0.00397219 G_PER_L |
CHEBI:76181
ferrous ammonium sulfate hexahydrate
|
|
| 8 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.0019861 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 9 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.000993049 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 10 | Yeast extract | 4.96524 G_PER_L | ||
| 11 | Tryptone | 2.48262 G_PER_L | ||
| 12 |
Sodium resazurin
C12H7NO4 229.191 g/mol
|
0.000496524 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 13 |
L-Cysteine HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
|
0.993049 G_PER_L |
CHEBI:91248
L-cysteine hydrochloride hydrate
|
|
| 14 |
D-Glucose
C6H12O6 180.156 g/mol
|
4.96524 G_PER_L |
CHEBI:17634
D-glucose
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1233 |
| 2026-02-03T11:18:54.209591 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1233 |
| 2026-03-13T06:19:23.914977Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003989 |
| 2026-03-17T06:29:39.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:38.551451+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "CALDICOPROBACTER medium" to "caldicoprobacter_medium" for consistent matching |
| 2026-05-20T06:00:49.658471+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '7.3-7.5' -> {'min': 7.3, 'max': 7.5} |
| 2026-06-05T07:40:20.171374+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 11 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:43.905285+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |