Overview
- External ontology
- komodo.medium:1239 (source link unavailable) — DESULFURISPIRILLUM medium
- Applications
-
- Microbial cultivation
- Notes
- Source: KOMODO ModelSEED | ID: 1239 | DSMZ Medium: 1239 (mediadive.medium:1239) | Aerobic: Yes
Composition
flowchart LR
CultureMech_003996["desulfurispirillum_medium"]
ing0_NaHCO3["NaHCO3"]
CultureMech_003996 --> ing0_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing0_NaHCO3 -.-> CHEBI_32139
ing1_NaCl["NaCl"]
CultureMech_003996 --> ing1_NaCl
CHEBI_26710["CHEBI:26710"]
ing1_NaCl -.-> CHEBI_26710
ing2_K2HPO4["K2HPO4"]
CultureMech_003996 --> ing2_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing2_K2HPO4 -.-> CHEBI_131527
ing3_Na2CO3["Na2CO3"]
CultureMech_003996 --> ing3_Na2CO3
CHEBI_29377["CHEBI:29377"]
ing3_Na2CO3 -.-> CHEBI_29377
ing4_MgSO4["MgSO4"]
CultureMech_003996 --> ing4_MgSO4
CHEBI_32599["CHEBI:32599"]
ing4_MgSO4 -.-> CHEBI_32599
ing5_Yeast_extract["Yeast extract"]
CultureMech_003996 --> ing5_Yeast_extract
ing6_Sodium_acetate["Sodium acetate"]
CultureMech_003996 --> ing6_Sodium_acetate
CHEBI_32954["CHEBI:32954"]
ing6_Sodium_acetate -.-> CHEBI_32954
ing7_KNO3["KNO3"]
CultureMech_003996 --> ing7_KNO3
CHEBI_63043["CHEBI:63043"]
ing7_KNO3 -.-> CHEBI_63043
ing8_Na2S["Na2S"]
CultureMech_003996 --> ing8_Na2S
CHEBI_76208["CHEBI:76208"]
ing8_Na2S -.-> CHEBI_76208
ing9_Na2_EDTA["Na2-EDTA"]
CultureMech_003996 --> ing9_Na2_EDTA
CHEBI_64734["CHEBI:64734"]
ing9_Na2_EDTA -.-> CHEBI_64734
ing10_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_003996 --> ing10_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing10_FeSO4_x_7_H2O -.-> CHEBI_75836
ing11_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_003996 --> ing11_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing11_CoCl2_x_6_H2O -.-> CHEBI_53503
ing12_MnCl2_x_2_H2O["MnCl2 x 2 H2O"]
CultureMech_003996 --> ing12_MnCl2_x_2_H2O
CHEBI_131395["CHEBI:131395"]
ing12_MnCl2_x_2_H2O -.-> CHEBI_131395
ing13_ZnCl2["ZnCl2"]
CultureMech_003996 --> ing13_ZnCl2
CHEBI_49976["CHEBI:49976"]
ing13_ZnCl2 -.-> CHEBI_49976
ing14_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_003996 --> ing14_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing14_NiCl2_x_6_H2O -.-> CHEBI_34887
ing15_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_003996 --> ing15_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing15_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing16_H3BO3["H3BO3"]
CultureMech_003996 --> ing16_H3BO3
CHEBI_33118["CHEBI:33118"]
ing16_H3BO3 -.-> CHEBI_33118
ing17_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_003996 --> ing17_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing17_CuCl2_x_2_H2O -.-> CHEBI_86318
Ingredients (18)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaHCO3
CHO3.Na 84.006 g/mol
|
30 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 2 |
NaCl
Cl.Na 58.443 g/mol
|
6 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 3 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.5 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 4 |
Na2CO3
CO3.2Na 105.988 g/mol
|
5.3 G_PER_L |
CHEBI:29377
sodium carbonate
|
|
| 5 |
MgSO4
Mg.O4S 120.368 g/mol
|
0.12037 G_PER_L |
CHEBI:32599
magnesium sulfate
|
|
| 6 | Yeast extract | 0.05 G_PER_L | ||
| 7 |
Sodium acetate
C2H3O2.Na 82.034 g/mol
|
1.6406 G_PER_L |
CHEBI:32954
sodium acetate
|
|
| 8 |
KNO3
K.NO3 101.102 g/mol
|
2.02206 G_PER_L |
CHEBI:63043
potassium nitrate
|
|
| 9 |
Na2S
2Na.S 78.047 g/mol
|
0.007906 G_PER_L |
CHEBI:76208
sodium sulfide (anhydrous)
|
|
| 10 |
Na2-EDTA
C10H14N2O8.2Na 336.208 g/mol
|
3 G_PER_L |
CHEBI:64734
EDTA disodium salt (anhydrous)
|
|
| 11 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
1.1 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 12 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.19 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 13 |
MnCl2 x 2 H2O
Cl2Mn.2H2O 161.874 g/mol
|
0.05 G_PER_L |
CHEBI:131395
manganese(II) chloride dihydrate
|
|
| 14 |
ZnCl2
2Cl.Zn 136.296 g/mol
|
0.042 G_PER_L |
CHEBI:49976
zinc dichloride
|
|
| 15 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.024 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 16 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.018 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 17 |
H3BO3
H3BO3 61.833 g/mol
|
0.3 G_PER_L |
CHEBI:33118
boric acid
|
|
| 18 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.002 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1239 |
| 2026-02-03T11:19:15.996552 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1239 |
| 2026-03-13T06:19:23.976562Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003996 |
| 2026-03-17T06:30:45.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:38.623560+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "DESULFURISPIRILLUM medium" to "desulfurispirillum_medium" for consistent matching |
| 2026-06-05T07:40:20.296143+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 15 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.209989+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:43.933588+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 5 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |