granulicella_medium

CultureMech:004036 bacterial COMPLEX SOLID_AGAR
Original name: GRANULICELLA medium

Overview

External ontology
komodo.medium:1284 (source link unavailable) — GRANULICELLA medium
Applications
  • Microbial cultivation
pH range
{'min': 4.5, 'max': 5.2}
Notes
Source: KOMODO ModelSEED | ID: 1284 | DSMZ Medium: 1284 (mediadive.medium:1284) | Aerobic: No

Composition

flowchart LR
    CultureMech_004036["granulicella_medium"]
    ing0_Glucose["Glucose"]
    CultureMech_004036 --> ing0_Glucose
    CHEBI_17234["CHEBI:17234"]
    ing0_Glucose -.-> CHEBI_17234
    ing1_Yeast_extract["Yeast extract"]
    CultureMech_004036 --> ing1_Yeast_extract
    ing2_Casamino_acids["Casamino acids"]
    CultureMech_004036 --> ing2_Casamino_acids
    ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_004036 --> ing3_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_004036 --> ing4_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing5_Agar["Agar"]
    CultureMech_004036 --> ing5_Agar
    CHEBI_2509["CHEBI:2509"]
    ing5_Agar -.-> CHEBI_2509

Ingredients (6)

# Ingredient Concentration Ontology Notes
1 Glucose
C6H12O6 180.156 g/mol
0.5 G_PER_L CHEBI:17234
glucose
2 Yeast extract 0.1 G_PER_L
3 Casamino acids 0.1 G_PER_L
4 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.04 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
5 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.02 G_PER_L CHEBI:86158
calcium chloride dihydrate
6 Agar 15 G_PER_L CHEBI:2509
agar
 (for solid medium)

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T01:15:01.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 1284
2026-02-03T11:18:56.373779 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 1284
2026-03-13T06:19:24.341659Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:004036
2026-03-17T06:29:45.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:39.064735+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "GRANULICELLA medium" to "granulicella_medium" for consistent matching
2026-05-20T06:00:49.943375+00:00 migrate_ph_range.py MIGRATED_PH_RANGE ph_range '4.5-5.2' -> {'min': 4.5, 'max': 5.2}
2026-06-05T07:40:20.642620+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 5 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-08T23:19:27.722189+00:00 chebi-regrounding-v1.0 Corrected CHEBI ingredient grounding (audit G21/G22) Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI).
2026-10-08T08:10:31.707883+00:00 codex CURATED_KOMODO_CONCENTRATION_SOURCE_EVIDENCE Exact medium/source membership, ingredient inventory/forms, physical-state conditions, literal snippets, and arithmetic checked. Stock boundaries, source-only rows, preparation context, and variants remain explicit follow-up tasks; secondary chemical mappings unchanged. KOMODO accession 1284 is mapped to the same DSMZ accession by https://komodo.modelseed.org/servlet/KomodoTomcatServerSideUtilitiesModelSeed?MediaList; mapping response SHA256=d8259d98e6dbffdf6961a1ab92bc86f3567d5d96de352bfa079edb2a91e9580a. The mapping supports identity only, not ingredient quantities or variants.