Overview
- External ontology
- komodo.medium:1327 (source link unavailable) — LARKINELLA ARBORICOLA medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 6.0, 'max': 6.5}
- Notes
- Source: KOMODO ModelSEED | ID: 1327 | DSMZ Medium: 1327 (mediadive.medium:1327) | Aerobic: No
Composition
flowchart LR
CultureMech_004083["larkinella_arboricola_medium"]
ing0_KH2PO4["KH2PO4"]
CultureMech_004083 --> ing0_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing0_KH2PO4 -.-> CHEBI_63036
ing1_N_Acetylglucosamine["N-Acetylglucosamine"]
CultureMech_004083 --> ing1_N_Acetylglucosamine
CHEBI_59640["CHEBI:59640"]
ing1_N_Acetylglucosamine -.-> CHEBI_59640
ing2_Peptone["Peptone"]
CultureMech_004083 --> ing2_Peptone
ing3_Yeast_extract["Yeast extract"]
CultureMech_004083 --> ing3_Yeast_extract
ing4_Casamino_acids["Casamino acids"]
CultureMech_004083 --> ing4_Casamino_acids
ing5_Glucose["Glucose"]
CultureMech_004083 --> ing5_Glucose
CHEBI_17234["CHEBI:17234"]
ing5_Glucose -.-> CHEBI_17234
ing6_Agar["Agar"]
CultureMech_004083 --> ing6_Agar
CHEBI_2509["CHEBI:2509"]
ing6_Agar -.-> CHEBI_2509
ing7_Nitrilotriacetic_acid["Nitrilotriacetic acid"]
CultureMech_004083 --> ing7_Nitrilotriacetic_acid
CHEBI_44557["CHEBI:44557"]
ing7_Nitrilotriacetic_acid -.-> CHEBI_44557
ing8_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_004083 --> ing8_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing8_MgSO4_x_7_H2O -.-> CHEBI_31795
ing9_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_004083 --> ing9_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing9_CaCl2_x_2_H2O -.-> CHEBI_86158
ing10__NH4_6Mo7O24_x_4_H2O["(NH4)6Mo7O24 x 4 H2O"]
CultureMech_004083 --> ing10__NH4_6Mo7O24_x_4_H2O
CHEBI_91249["CHEBI:91249"]
ing10__NH4_6Mo7O24_x_4_H2O -.-> CHEBI_91249
ing11_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_004083 --> ing11_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing11_FeSO4_x_7_H2O -.-> CHEBI_75836
ing12_Na_EDTA["Na-EDTA"]
CultureMech_004083 --> ing12_Na_EDTA
CHEBI_64734["CHEBI:64734"]
ing12_Na_EDTA -.-> CHEBI_64734
ing13_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_004083 --> ing13_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing13_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing14_MnSO4_x_H2O["MnSO4 x H2O"]
CultureMech_004083 --> ing14_MnSO4_x_H2O
CHEBI_86364["CHEBI:86364"]
ing14_MnSO4_x_H2O -.-> CHEBI_86364
ing15_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
CultureMech_004083 --> ing15_CuSO4_x_5_H2O
CHEBI_31440["CHEBI:31440"]
ing15_CuSO4_x_5_H2O -.-> CHEBI_31440
ing16_Co_NO3_2_x_6_H2O["Co(NO3)2 x 6 H2O"]
CultureMech_004083 --> ing16_Co_NO3_2_x_6_H2O
CHEBI_86214["CHEBI:86214"]
ing16_Co_NO3_2_x_6_H2O -.-> CHEBI_86214
ing17_Na2B4O7_x_10_H2O["Na2B4O7 x 10 H2O"]
CultureMech_004083 --> ing17_Na2B4O7_x_10_H2O
CHEBI_131366["CHEBI:131366"]
ing17_Na2B4O7_x_10_H2O -.-> CHEBI_131366
Ingredients (18)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.1 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 2 | N-Acetylglucosamine | 1 G_PER_L |
CHEBI:59640
N-acetylglucosamine
|
|
| 3 | Peptone | 0.1 G_PER_L | ||
| 4 | Yeast extract | 0.1 G_PER_L | ||
| 5 | Casamino acids | 0.1 G_PER_L | ||
| 6 |
Glucose
C6H12O6 180.156 g/mol
|
0.5 G_PER_L |
CHEBI:17234
glucose
|
|
| 7 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
(for solid medium) |
| 8 |
Nitrilotriacetic acid
C6H9NO6 191.139 g/mol
|
10 G_PER_L |
CHEBI:44557
nitrilotriacetic acid
|
|
| 9 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
29.7 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 10 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
3.335 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 11 |
(NH4)6Mo7O24 x 4 H2O
2H4N.MoO4 196.014 g/mol
|
0.00925 G_PER_L |
CHEBI:91249
ammonium molybdate
|
|
| 12 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
1.099 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
[Merged 3 duplicates: 0.099, 0.5, 0.5] |
| 13 |
Na-EDTA
C10H14N2O8.2Na 336.208 g/mol
|
0.25 G_PER_L |
CHEBI:64734
EDTA disodium salt (anhydrous)
|
[Collapsed 2 identical duplicates: 0.25, 0.25] |
| 14 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
1.095 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
[Collapsed 2 identical duplicates: 1.095, 1.095] |
| 15 |
MnSO4 x H2O
H2O.Mn.O4S 169.016 g/mol
|
0.154 G_PER_L |
CHEBI:86364
manganese(II) sulfate monohydrate
|
[Collapsed 2 identical duplicates: 0.154, 0.154] |
| 16 |
CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
|
0.0392 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
[Collapsed 2 identical duplicates: 0.0392, 0.0392] |
| 17 |
Co(NO3)2 x 6 H2O
Co.6H2O.2NO3 291.031 g/mol
|
0.0248 G_PER_L |
CHEBI:86214
cobalt dinitrate hexahydrate
|
[Collapsed 2 identical duplicates: 0.0248, 0.0248] |
| 18 |
Na2B4O7 x 10 H2O
10H2O.H4B4O9.2Na 417.401 g/mol
|
0.0177 G_PER_L |
CHEBI:131366
disodium tetraborate decahydrate
|
[Collapsed 2 identical duplicates: 0.0177, 0.0177] |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:02.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1327 |
| 2026-02-03T11:18:58.990760 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1327 |
| 2026-03-13T03:08:49.330870Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 8 duplicate ingredient(s) |
| 2026-03-13T06:19:24.675600Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:004083 |
| 2026-03-17T06:29:52.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:39.459063+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "LARKINELLA ARBORICOLA medium" to "larkinella_arboricola_medium" for consistent matching |
| 2026-05-20T06:00:50.140380+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '6.0-6.5' -> {'min': 6.0, 'max': 6.5} |
| 2026-06-05T07:40:20.888356+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 14 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-08T23:19:27.745802+00:00 | chebi-regrounding-v1.0 | Corrected CHEBI ingredient grounding (audit G21/G22) | Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI). |
| 2026-06-10T07:46:44.122979+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-02T07:37:36.021640+00:00 | repair_merged_duplicates.py | REPAIRED_SUMMED_DUPLICATE_MERGE | Collapsed 6 ingredient row(s) whose concentration was the SUM of identical duplicate values written by cleanup_media_quality.py. Every merged part was the same value, so the pre-merge value is unambiguous and no source lookup was needed. Rows whose merged parts differ were left untouched. |