Overview
- External ontology
- komodo.medium:265 (source link unavailable) — THERMOFILUM PENDENS medium
- Applications
-
- Microbial cultivation
- pH
- 5.2
- Notes
- Source: KOMODO ModelSEED | ID: 265 | DSMZ Medium: 265 (mediadive.medium:265) | Aerobic: Yes Original-source preparation scope: mineral salt base plus separately prepared yeast-extract, sucrose, sulfur, polar-lipid and sulfide additions under 100% nitrogen. Historical aerobic/import annotations are not endorsed. Basal rates remain provider-declared 1000 ml normalizations only. The original PDF supplies stock strengths and batch doses; its lipid range differs from the API's modified protocol. Neither source establishes a measured final receiving volume. Chemical mappings, parent/variant links and prior curation history are preserved, not independently revalidated.
Composition
flowchart LR
CultureMech_004668["thermofilum_pendens_medium"]
ing0_Sulfur["Sulfur"]
CultureMech_004668 --> ing0_Sulfur
CHEBI_26833["CHEBI:26833"]
ing0_Sulfur -.-> CHEBI_26833
Ingredients (1)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Sulfur
S 32.067 g/mol
|
CHEBI:26833
sulfur atom
|
Source batch input: 10 g powdered sulfur, sterilized separately by steaming for 3 h on each of three successive days and added to the autoclaved mineral salt preparation. The former 10 g/L is not retained as a final-medium concentration; final volume is unspecified. |
Preparation
- Adjust final pH to 5.2.
- Prepare the medium anaerobically under 100% nitrogen. The following constituents are prepared separately and added to the autoclaved mineral salt solution: Yeast extract (20 ml of 10% w/v solution)-boiled for few minutes, not autoclaved; sucrose (20 ml of 10% w/v solution)-filter-sterilized; sulfur (10 g)-sterilized by steaming for 3 h on each of three successive days; polar lipid fraction (6 - 12ml)-prepared as described by W. Zillig et al. (1983), Syst. Appl. Microbiol. 4: 79 - 87; Na2S x 9 H2O (10 ml of 3% w/v solution)-autoclaved under nitrogen atmosphere.
Solutions
Mineral salt preparation for medium 265
| Ingredient | Concentration | Notes |
|---|---|---|
| (NH4)2SO4 | 1.3 G_PER_L | Mineral-base batch input: 1.3 g. Retained 1.3 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| KH2PO4 | 0.28 G_PER_L | Mineral-base batch input: 0.28 g. Retained 0.28 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| MgSO4 x 7 H2O | 0.25 G_PER_L | Mineral-base batch input: 0.25 g. Retained 0.25 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| CaCl2 x 2 H2O | 0.07 G_PER_L | Mineral-base batch input: 0.07 g. Retained 0.07 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| FeCl3 x 6 H2O | 0.02 G_PER_L | Mineral-base batch input: 0.02 g. Retained 0.02 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| MnCl2 x 4 H2O | 0.0018 G_PER_L | Mineral-base batch input: 1.8 mg. Retained 0.0018 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| Na2B4O7 x 10 H2O | 0.0045 G_PER_L | Mineral-base batch input: 4.5 mg. Retained 0.0045 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| ZnSO4 x 7 H2O | 0.00022 G_PER_L | Mineral-base batch input: 0.22 mg. Retained 0.00022 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| CuCl2 x 2 H2O | 5e-05 G_PER_L | Mineral-base batch input: 0.05 mg. Retained 5e-05 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| Na2MoO4 x 2 H2O | 3e-05 G_PER_L | Mineral-base batch input: 0.03 mg. Retained 3e-05 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| VOSO4 x 2 H2O | 3e-05 G_PER_L | Mineral-base batch input: 0.03 mg. Retained 3e-05 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| CoSO4 x 7 H2O | 1e-05 G_PER_L | Mineral-base batch input: 0.01 mg. Retained 1e-05 g/L is the provider-declared 1000 ml normalization, not a verified concentration after supplement addition or a measured final base volume. |
| Distilled water | 1 L | 1000 ml distilled-water input per mineral-base batch, not a final-volume instruction. |
1000 ml distilled water is a batch input, not final-volume makeup. The retained basal g/L values are provider-reported rates on the API's 1000 ml basis, not measured final stock or complete-medium concentrations. No base addition volume is inferred.
Yeast extract stock (10% w/v)
Dose: 0.02 L
| Ingredient | Concentration | Notes |
|---|---|---|
| Yeast extract | 10 PERCENT_W_V | 10% w/v in the separately prepared stock, not the former imported final-medium rate. Original source: 20 ml stock contains 2 g yeast extract; the API's 20 mg/l and former 0.02 g/L disagree. The PDF calls for boiling, not autoclaving; its instruction does not add a separate yeast filtration step. |
| Water | Stock solvent according to the API attribute; no fixed carrier volume is specified. |
Original-recipe batch addition, not liters per liter of final medium. Stock strength and batch dose are separate claims; the stock solvent amount and final receiving volume are not inferred.
Sucrose stock (10% w/v)
Dose: 0.02 L
| Ingredient | Concentration | Notes |
|---|---|---|
| Sucrose | 10 PERCENT_W_V | 10% w/v in the separately prepared stock, not the former imported final-medium rate. Receiving-medium concentration is unresolved because its final volume is not established. |
| Water | Stock solvent according to the API attribute; no fixed carrier volume is specified. |
Original-recipe batch addition, not liters per liter of final medium. Stock strength and batch dose are separate claims; the stock solvent amount and final receiving volume are not inferred.
Na2S x 9 H2O stock (3% w/v)
Dose: 0.01 L
| Ingredient | Concentration | Notes |
|---|---|---|
| Na2S x 9 H2O | 3 PERCENT_W_V | 3% w/v in the separately prepared stock, not the former imported final-medium rate. Receiving-medium concentration is unresolved because its final volume is not established. |
| Water | Stock solvent according to the API attribute; no fixed carrier volume is specified. |
Original-recipe batch addition, not liters per liter of final medium. Stock strength and batch dose are separate claims; the stock solvent amount and final receiving volume are not inferred.
Polar lipid aqueous suspension
Dose: 0.006-0.012 L
| Ingredient | Concentration | Notes |
|---|---|---|
| Polar lipid fraction | Source material: aqueous polar-lipid suspension prepared from Thermoproteus tenax (DSM 2078) or another archaebacterium. Composition, extraction yield and lipid mass concentration are not specified. Former mass/percentage encoding is withdrawn. |
Original PDF batch dose: 6-12 ml. The API alternatively lists 10 ml/l and a modified biomass extraction procedure; that version is retained in evidence, not silently substituted for the original range or used to calculate final lipid concentration.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:02.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 265 |
| 2026-02-03T11:19:07.862897 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 265 |
| 2026-03-13T06:19:27.968011Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:004668 |
| 2026-03-17T06:30:20.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:43.280238+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "THERMOFILUM PENDENS medium" to "thermofilum_pendens_medium" for consistent matching |
| 2026-06-05T07:40:21.973109+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 14 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:44.473468+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-10-07T23:16:26.355318+00:00 | codex | RESTORED_DSMZ265_STOCK_STAGES_AND_ORIGINAL_SOURCE_DOSES | Restored mineral base, three percentage stocks and lipid suspension; corrected water input and yeast stock basis; withdrew unsupported sulfur/lipid rates. Preserved original-source/API disagreement, all prior snippets, history, IDs, chemical mappings and variant links. No growth association or final receiving concentration inferred. |