Overview
- External ontology
- komodo.medium:306 (source link unavailable) — NY-AGAR
- Applications
-
- Microbial cultivation
- pH
- 7.0
- Notes
- Source: KOMODO ModelSEED | ID: 306 | DSMZ Medium: 306 (mediadive.medium:306) | Aerobic: No
Composition
flowchart LR
CultureMech_004854["ny_agar"]
ing0_Peptone["Peptone"]
CultureMech_004854 --> ing0_Peptone
ing1_Meat_extract["Meat extract"]
CultureMech_004854 --> ing1_Meat_extract
ing2_Agar["Agar"]
CultureMech_004854 --> ing2_Agar
CHEBI_2509["CHEBI:2509"]
ing2_Agar -.-> CHEBI_2509
ing3_Yeast_extract["Yeast extract"]
CultureMech_004854 --> ing3_Yeast_extract
Ingredients (4)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Peptone | 5 G_PER_L |
MICRO:0000178 (source link unavailable)
Peptone
|
|
| 2 | Meat extract | 3 G_PER_L | ||
| 3 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
(if necessary) |
| 4 | Yeast extract | 5 G_PER_L |
FOODON:03315426
Yeast extract
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:02.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 306 |
| 2026-02-03T11:19:02.484539 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 306 |
| 2026-03-13T06:19:28.905928Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:004854 |
| 2026-03-17T06:30:03.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:44.395986+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "NY-AGAR" to "ny_agar" for consistent matching |
| 2026-06-05T07:40:22.319501+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 1 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-09-13T00:00:00-07:00 | repair_komodo_jcm_score10_exact_terms.py | GROUNDED_KOMODO_JCM_SCORE10_EXACT_TERMS | Applied local mappings for Peptone, Yeast extract. |
| 2026-10-07T22:47:39.592416+00:00 | codex | CURATED_KOMODO_CONCENTRATION_SOURCE_EVIDENCE | Exact medium/source membership, ingredient inventory/forms, physical-state conditions, literal snippets, and arithmetic checked. Stock boundaries, source-only rows, preparation context, and variants remain explicit follow-up tasks; secondary chemical mappings unchanged. KOMODO accession 306 is mapped to the same DSMZ accession by https://komodo.modelseed.org/servlet/KomodoTomcatServerSideUtilitiesModelSeed?MediaList; mapping response SHA256=d8259d98e6dbffdf6961a1ab92bc86f3567d5d96de352bfa079edb2a91e9580a. The mapping supports identity only, not ingredient quantities or variants. |