Overview
- External ontology
- komodo.medium:363 (source link unavailable) — PHENYLOBACTERIUM MEDIUM
- Applications
-
- Microbial cultivation
- Notes
- Source: KOMODO ModelSEED | ID: 363 | DSMZ Medium: 363 (mediadive.medium:363) | Aerobic: No
Composition
flowchart LR
CultureMech_005086["phenylobacterium_medium"]
ing0_Antipyrine["Antipyrine"]
CultureMech_005086 --> ing0_Antipyrine
CHEBI_31225["CHEBI:31225"]
ing0_Antipyrine -.-> CHEBI_31225
ing1_KH2PO4["KH2PO4"]
CultureMech_005086 --> ing1_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing1_KH2PO4 -.-> CHEBI_63036
ing2_Na2HPO4_x_12_H2O["Na2HPO4 x 12 H2O"]
CultureMech_005086 --> ing2_Na2HPO4_x_12_H2O
CHEBI_34683["CHEBI:34683"]
ing2_Na2HPO4_x_12_H2O -.-> CHEBI_34683
ing3__NH4_2HPO4["(NH4)2HPO4"]
CultureMech_005086 --> ing3__NH4_2HPO4
CHEBI_63051["CHEBI:63051"]
ing3__NH4_2HPO4 -.-> CHEBI_63051
ing4_NH4H2PO4["NH4H2PO4"]
CultureMech_005086 --> ing4_NH4H2PO4
CHEBI_62982["CHEBI:62982"]
ing4_NH4H2PO4 -.-> CHEBI_62982
ing5__NH4_2SO4["(NH4)2SO4"]
CultureMech_005086 --> ing5__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing5__NH4_2SO4 -.-> CHEBI_62946
ing6_CaCl2_x_6_H2O["CaCl2 x 6 H2O"]
CultureMech_005086 --> ing6_CaCl2_x_6_H2O
CHEBI_91243["CHEBI:91243"]
ing6_CaCl2_x_6_H2O -.-> CHEBI_91243
ing7_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_005086 --> ing7_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing7_MgSO4_x_7_H2O -.-> CHEBI_31795
ing8_H3BO3["H3BO3"]
CultureMech_005086 --> ing8_H3BO3
CHEBI_33118["CHEBI:33118"]
ing8_H3BO3 -.-> CHEBI_33118
ing9_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
CultureMech_005086 --> ing9_CuSO4_x_5_H2O
CHEBI_31440["CHEBI:31440"]
ing9_CuSO4_x_5_H2O -.-> CHEBI_31440
ing10_KI["KI"]
CultureMech_005086 --> ing10_KI
CHEBI_8346["CHEBI:8346"]
ing10_KI -.-> CHEBI_8346
ing11_FeCl3_x_6_H2O["FeCl3 x 6 H2O"]
CultureMech_005086 --> ing11_FeCl3_x_6_H2O
CHEBI_86254["CHEBI:86254"]
ing11_FeCl3_x_6_H2O -.-> CHEBI_86254
ing12_MnSO4_x_4_H2O["MnSO4 x 4 H2O"]
CultureMech_005086 --> ing12_MnSO4_x_4_H2O
CHEBI_86358["CHEBI:86358"]
ing12_MnSO4_x_4_H2O -.-> CHEBI_86358
ing13_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_005086 --> ing13_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing13_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing14__NH4_2MoO4["(NH4)2MoO4"]
CultureMech_005086 --> ing14__NH4_2MoO4
CHEBI_91249["CHEBI:91249"]
ing14__NH4_2MoO4 -.-> CHEBI_91249
ing15_Biotin["Biotin"]
CultureMech_005086 --> ing15_Biotin
CHEBI_15956["CHEBI:15956"]
ing15_Biotin -.-> CHEBI_15956
ing16_Vitamin_B12["Vitamin B12"]
CultureMech_005086 --> ing16_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing16_Vitamin_B12 -.-> CHEBI_176843
Ingredients (17)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Antipyrine
C11H12N2O 188.23 g/mol
|
1 G_PER_L |
CHEBI:31225
antipyrine
|
|
| 2 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.3 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 3 |
Na2HPO4 x 12 H2O
HO4P.2Na 141.958 g/mol
|
0.7 G_PER_L |
CHEBI:34683
disodium hydrogenphosphate
|
|
| 4 |
(NH4)2HPO4
2H4N.HO4P 132.056 g/mol
|
0.7 G_PER_L |
CHEBI:63051
diammonium hydrogen phosphate
|
|
| 5 |
NH4H2PO4
H2O4P.H4N 115.025 g/mol
|
0.3 G_PER_L |
CHEBI:62982
ammonium dihydrogen phosphate
|
|
| 6 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
0.1 G_PER_L |
CHEBI:62946
ammonium sulfate
|
|
| 7 |
CaCl2 x 6 H2O
Ca.2Cl.6H2O 219.074 g/mol
|
0.05 G_PER_L |
CHEBI:91243
calcium chloride hexahydrate
|
|
| 8 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.25 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 9 |
H3BO3
H3BO3 61.833 g/mol
|
0.0005 G_PER_L |
CHEBI:33118
boric acid
|
|
| 10 |
CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
|
4e-05 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
|
| 11 |
KI
I.K 166.002 g/mol
|
0.0001 G_PER_L |
CHEBI:8346
potassium iodide
|
|
| 12 |
FeCl3 x 6 H2O
Cl3Fe.6H2O 270.294 g/mol
|
0.0002 G_PER_L |
CHEBI:86254
iron trichloride hexahydrate
|
|
| 13 |
MnSO4 x 4 H2O
4H2O.Mn.O4S 223.061 g/mol
|
0.0004 G_PER_L |
CHEBI:86358
manganese(II) sulfate tetrahydrate
|
|
| 14 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.0004 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 15 |
(NH4)2MoO4
2H4N.MoO4 196.014 g/mol
|
0.0002 G_PER_L |
CHEBI:91249
ammonium molybdate
|
|
| 16 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.0001 G_PER_L |
CHEBI:15956
biotin
|
|
| 17 | Vitamin B12 | 3e-05 G_PER_L |
CHEBI:176843
vitamin B12
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:02.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 363 |
| 2026-02-03T11:19:10.843212 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 363 |
| 2026-03-13T06:19:30.018993Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:005086 |
| 2026-03-17T06:30:29.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:45.689794+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "PHENYLOBACTERIUM MEDIUM" to "phenylobacterium_medium" for consistent matching |
| 2026-06-05T07:40:22.732709+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 15 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.245260+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:44.687842+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-12T00:00:00-07:00 | repair_dsmz_363_phenylobacterium_score15.py | RESOLVED_DSMZ_KOMODO_363_SCORE15 | KOMODO Medium 363.1 was resolved as an Antipyrine-to-L-phenylalanine variant. |