Overview
- External ontology
- komodo.medium:413_6644 (source link unavailable) — MEDIUM 413 MODIFIED FOR DSM 6644
- Applications
-
- Microbial cultivation
- pH
- 7.0
- Notes
- Source: KOMODO ModelSEED | ID: 413_6644 | DSMZ Medium: 413 (mediadive.medium:413) | Aerobic: No
Composition
flowchart LR
CultureMech_005238["medium_413_modified_for_dsm_6644"]
ing0_Na_formiate["Na-formiate"]
CultureMech_005238 --> ing0_Na_formiate
CHEBI_62965["CHEBI:62965"]
ing0_Na_formiate -.-> CHEBI_62965
ing1_Na_fumarate["Na-fumarate"]
CultureMech_005238 --> ing1_Na_fumarate
CHEBI_115156["CHEBI:115156"]
ing1_Na_fumarate -.-> CHEBI_115156
ing2_Ground_beef["Ground beef"]
CultureMech_005238 --> ing2_Ground_beef
ing3_NaOH["NaOH"]
CultureMech_005238 --> ing3_NaOH
CHEBI_32145["CHEBI:32145"]
ing3_NaOH -.-> CHEBI_32145
ing4_Casitone["Casitone"]
CultureMech_005238 --> ing4_Casitone
ing5_Yeast_extract["Yeast extract"]
CultureMech_005238 --> ing5_Yeast_extract
ing6_K2HPO4["K2HPO4"]
CultureMech_005238 --> ing6_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing6_K2HPO4 -.-> CHEBI_131527
ing7_Resazurin["Resazurin"]
CultureMech_005238 --> ing7_Resazurin
CHEBI_8806["CHEBI:8806"]
ing7_Resazurin -.-> CHEBI_8806
ing8_L_Cysteine_HCl["L-Cysteine HCl"]
CultureMech_005238 --> ing8_L_Cysteine_HCl
CHEBI_91247["CHEBI:91247"]
ing8_L_Cysteine_HCl -.-> CHEBI_91247
ing9_Agar["Agar"]
CultureMech_005238 --> ing9_Agar
CHEBI_2509["CHEBI:2509"]
ing9_Agar -.-> CHEBI_2509
ing10_Haemin["Haemin"]
CultureMech_005238 --> ing10_Haemin
CHEBI_50385["CHEBI:50385"]
ing10_Haemin -.-> CHEBI_50385
ing11_Vitamin_K3["Vitamin K3"]
CultureMech_005238 --> ing11_Vitamin_K3
CHEBI_28869["CHEBI:28869"]
ing11_Vitamin_K3 -.-> CHEBI_28869
ing12_Ethanol["Ethanol"]
CultureMech_005238 --> ing12_Ethanol
CHEBI_16236["CHEBI:16236"]
ing12_Ethanol -.-> CHEBI_16236
ing13_Vitamin_K1["Vitamin K1"]
CultureMech_005238 --> ing13_Vitamin_K1
CHEBI_18067["CHEBI:18067"]
ing13_Vitamin_K1 -.-> CHEBI_18067
Ingredients (14)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Na-formiate
CHO2.Na 68.007 g/mol
|
60 G_PER_L |
CHEBI:62965
sodium formate
|
|
| 2 |
Na-fumarate
C4H2O4.2Na 160.036 g/mol
|
60 G_PER_L |
CHEBI:115156
disodium fumarate
|
|
| 3 | Ground beef | 487.805 G_PER_L | ||
| 4 |
NaOH
HO.Na 39.997 g/mol
|
26.0 G_PER_L |
CHEBI:32145
sodium hydroxide
|
[Merged 2 duplicates: 25.0, 1.0] |
| 5 | Casitone | 29.2683 G_PER_L | ||
| 6 | Yeast extract | 4.87805 G_PER_L | ||
| 7 |
K2HPO4
HO4P.2K 174.174 g/mol
|
4.87805 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 8 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.00097561 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 9 |
L-Cysteine HCl
C3H7NO2S.HCl 157.622 g/mol
|
0.487805 G_PER_L |
CHEBI:91247
L-cysteine hydrochloride
|
|
| 10 | Agar | 14.6341 G_PER_L |
CHEBI:2509
agar
|
(for solid medium) |
| 11 |
Haemin
C34H32ClFeN4O4 651.952 g/mol
|
0.5 G_PER_L |
CHEBI:50385
hemin
|
|
| 12 |
Vitamin K3
C11H8O2 172.183 g/mol
|
0.05 G_PER_L |
CHEBI:28869
menadione
|
|
| 13 |
Ethanol
C2H6O 46.069 g/mol
|
959.5 G_PER_L |
CHEBI:16236
ethanol
|
[Merged 2 duplicates: 9.5, 950.0] |
| 14 |
Vitamin K1
C31H46O2 450.707 g/mol
|
0.1 G_PER_L |
CHEBI:18067
phylloquinone
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:02.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 413_6644 |
| 2026-02-03T11:19:01.129487 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 413 |
| 2026-03-13T03:08:54.638808Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 2 duplicate ingredient(s) |
| 2026-03-13T06:19:31.256162Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:005238 |
| 2026-03-17T06:29:58.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:47.125908+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "MEDIUM 413 MODIFIED FOR DSM 6644" to "medium_413_modified_for_dsm_6644" for consistent matching |
| 2026-06-05T07:41:18.978754+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 9 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:47:02.658994+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |