acidaminococcus_fermentans_medium

CultureMech:005241 bacterial COMPLEX LIQUID
Original name: ACIDAMINOCOCCUS FERMENTANS medium

Overview

External ontology
komodo.medium:414 (source link unavailable) — ACIDAMINOCOCCUS FERMENTANS medium
Applications
  • Microbial cultivation
pH range
{'min': 7.0, 'max': 7.2}
Notes
Source: KOMODO ModelSEED | ID: 414 | DSMZ Medium: 414 (mediadive.medium:414) | Aerobic: No

Composition

flowchart LR
    CultureMech_005241["acidaminococcus_fermentans_medium"]
    ing0_Trypticase_peptone["Trypticase peptone"]
    CultureMech_005241 --> ing0_Trypticase_peptone
    ing1_Casamino_acids["Casamino acids"]
    CultureMech_005241 --> ing1_Casamino_acids
    ing2_Yeast_extract["Yeast extract"]
    CultureMech_005241 --> ing2_Yeast_extract
    ing3_Glucose["Glucose"]
    CultureMech_005241 --> ing3_Glucose
    CHEBI_17234["CHEBI:17234"]
    ing3_Glucose -.-> CHEBI_17234
    ing4_Na_glutamate["Na glutamate"]
    CultureMech_005241 --> ing4_Na_glutamate
    CHEBI_64220["CHEBI:64220"]
    ing4_Na_glutamate -.-> CHEBI_64220
    ing5_Arginine["Arginine"]
    CultureMech_005241 --> ing5_Arginine
    CHEBI_29016["CHEBI:29016"]
    ing5_Arginine -.-> CHEBI_29016
    ing6_Glycine["Glycine"]
    CultureMech_005241 --> ing6_Glycine
    CHEBI_15428["CHEBI:15428"]
    ing6_Glycine -.-> CHEBI_15428
    ing7_DL_Tryptophan["DL-Tryptophan"]
    CultureMech_005241 --> ing7_DL_Tryptophan
    CHEBI_27897["CHEBI:27897"]
    ing7_DL_Tryptophan -.-> CHEBI_27897
    ing8_KH2PO4["KH2PO4"]
    CultureMech_005241 --> ing8_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing8_KH2PO4 -.-> CHEBI_63036
    ing9_Tween_80["Tween 80"]
    CultureMech_005241 --> ing9_Tween_80
    CHEBI_53426["CHEBI:53426"]
    ing9_Tween_80 -.-> CHEBI_53426
    ing10_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
    CultureMech_005241 --> ing10_L_Cysteine_HCl_x_H2O
    CHEBI_91248["CHEBI:91248"]
    ing10_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248

Ingredients (11)

# Ingredient Concentration Ontology Notes
1 Trypticase peptone 5 G_PER_L
2 Casamino acids 10 G_PER_L
3 Yeast extract 5 G_PER_L
4 Glucose
C6H12O6 180.156 g/mol
5 G_PER_L CHEBI:17234
glucose
5 Na glutamate
C5H8NO4.Na 169.112 g/mol
4 G_PER_L CHEBI:64220
monosodium glutamate
6 Arginine
C6H14N4O2 174.204 g/mol
1 G_PER_L CHEBI:29016
arginine
7 Glycine
C2H5NO2 75.067 g/mol
1 G_PER_L CHEBI:15428
glycine
8 DL-Tryptophan
C11H12N2O2 204.229 g/mol
0.1 G_PER_L CHEBI:27897
tryptophan
9 KH2PO4
H2O4P.K 136.084 g/mol
2 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
10 Tween 80
(C2H4O)w.(C2H4O)x.(C2H4O)y.(C2H4O)z.C24H44O6 604.822 g/mol
0.5 G_PER_L CHEBI:53426
polysorbate 80
11 L-Cysteine HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
0.5 G_PER_L CHEBI:91248
L-cysteine hydrochloride hydrate

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T01:15:02.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 414
2026-02-03T11:19:13.855837 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 414
2026-03-13T06:19:31.275352Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:005241
2026-03-17T06:30:39.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:47.147391+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "ACIDAMINOCOCCUS FERMENTANS medium" to "acidaminococcus_fermentans_medium" for consistent matching
2026-05-20T06:00:51.698831+00:00 migrate_ph_range.py MIGRATED_PH_RANGE ph_range '7.0-7.2' -> {'min': 7.0, 'max': 7.2}
2026-06-05T07:40:23.144883+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 9 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-08T23:19:28.001892+00:00 chebi-regrounding-v1.0 Corrected CHEBI ingredient grounding (audit G21/G22) Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI).
2026-06-10T07:46:44.835364+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-10-07T22:47:39.592416+00:00 codex CURATED_KOMODO_CONCENTRATION_SOURCE_EVIDENCE Exact medium/source membership, ingredient inventory/forms, physical-state conditions, literal snippets, and arithmetic checked. Stock boundaries, source-only rows, preparation context, and variants remain explicit follow-up tasks; secondary chemical mappings unchanged. KOMODO accession 414 is mapped to the same DSMZ accession by https://komodo.modelseed.org/servlet/KomodoTomcatServerSideUtilitiesModelSeed?MediaList; mapping response SHA256=d8259d98e6dbffdf6961a1ab92bc86f3567d5d96de352bfa079edb2a91e9580a. The mapping supports identity only, not ingredient quantities or variants.