archaeoglobus_profundus_medium (CultureMech:005877)

Overview

External ontology

komodo.medium:519 (source link unavailable) — ARCHAEOGLOBUS PROFUNDUS medium

Applications

Microbial cultivation

pH

6.5

Notes

Source: KOMODO ModelSEED | ID: 519 | DSMZ Medium: 519 (mediadive.medium:519) | Aerobic: Yes

Composition

flowchart LR
    CultureMech_005877["archaeoglobus_profundus_medium"]
    ing0_KCl["KCl"]
    CultureMech_005877 --> ing0_KCl
    CHEBI_32588["CHEBI:32588"]
    ing0_KCl -.-> CHEBI_32588
    ing1_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_005877 --> ing1_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing1_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_005877 --> ing2_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing3_Na2SO4["Na2SO4"]
    CultureMech_005877 --> ing3_Na2SO4
    CHEBI_32149["CHEBI:32149"]
    ing3_Na2SO4 -.-> CHEBI_32149
    ing4_NH4Cl["NH4Cl"]
    CultureMech_005877 --> ing4_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing4_NH4Cl -.-> CHEBI_31206
    ing5_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_005877 --> ing5_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing5_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing6_K2HPO4["K2HPO4"]
    CultureMech_005877 --> ing6_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing6_K2HPO4 -.-> CHEBI_131527
    ing7_NaCl["NaCl"]
    CultureMech_005877 --> ing7_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing7_NaCl -.-> CHEBI_26710
    ing8_Yeast_extract["Yeast extract"]
    CultureMech_005877 --> ing8_Yeast_extract
    ing9_Na_acetate["Na-acetate"]
    CultureMech_005877 --> ing9_Na_acetate
    CHEBI_32954["CHEBI:32954"]
    ing9_Na_acetate -.-> CHEBI_32954
    ing10_Fe_NH4_2_SO4_2_x_7_H2O["Fe(NH4)2(SO4)2 x 7 H2O"]
    CultureMech_005877 --> ing10_Fe_NH4_2_SO4_2_x_7_H2O
    CHEBI_131378["CHEBI:131378"]
    ing10_Fe_NH4_2_SO4_2_x_7_H2O -.-> CHEBI_131378
    ing11_Sodium_resazurin["Sodium resazurin"]
    CultureMech_005877 --> ing11_Sodium_resazurin
    CHEBI_8806["CHEBI:8806"]
    ing11_Sodium_resazurin -.-> CHEBI_8806
    ing12_NaHCO3["NaHCO3"]
    CultureMech_005877 --> ing12_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing12_NaHCO3 -.-> CHEBI_32139
    ing13_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_005877 --> ing13_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing13_Na2S_x_9_H2O -.-> CHEBI_76209
    ing14_Nitrilotriacetic_acid["Nitrilotriacetic acid"]
    CultureMech_005877 --> ing14_Nitrilotriacetic_acid
    CHEBI_44557["CHEBI:44557"]
    ing14_Nitrilotriacetic_acid -.-> CHEBI_44557
    ing15_MnSO4_x_H2O["MnSO4 x H2O"]
    CultureMech_005877 --> ing15_MnSO4_x_H2O
    CHEBI_86364["CHEBI:86364"]
    ing15_MnSO4_x_H2O -.-> CHEBI_86364
    ing16_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_005877 --> ing16_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing16_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing17_CoSO4_x_7_H2O["CoSO4 x 7 H2O"]
    CultureMech_005877 --> ing17_CoSO4_x_7_H2O
    CHEBI_91244["CHEBI:91244"]
    ing17_CoSO4_x_7_H2O -.-> CHEBI_91244
    ing18_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_005877 --> ing18_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing18_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing19_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
    CultureMech_005877 --> ing19_CuSO4_x_5_H2O
    CHEBI_31440["CHEBI:31440"]
    ing19_CuSO4_x_5_H2O -.-> CHEBI_31440
    ing20_AlK_SO4_2_x_12_H2O["AlK(SO4)2 x 12 H2O"]
    CultureMech_005877 --> ing20_AlK_SO4_2_x_12_H2O
    CHEBI_86465["CHEBI:86465"]
    ing20_AlK_SO4_2_x_12_H2O -.-> CHEBI_86465
    ing21_H3BO3["H3BO3"]
    CultureMech_005877 --> ing21_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing21_H3BO3 -.-> CHEBI_33118
    ing22_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_005877 --> ing22_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing22_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing23_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_005877 --> ing23_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing23_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing24_Na2SeO3_x_5_H2O["Na2SeO3 x 5 H2O"]
    CultureMech_005877 --> ing24_Na2SeO3_x_5_H2O
    CHEBI_131361["CHEBI:131361"]
    ing24_Na2SeO3_x_5_H2O -.-> CHEBI_131361
    ing25_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
    CultureMech_005877 --> ing25_Na2WO4_x_2_H2O
    CHEBI_63939["CHEBI:63939"]
    ing25_Na2WO4_x_2_H2O -.-> CHEBI_63939

Ingredients (26)

#	Ingredient	Concentration	Ontology	Notes
1	KCl Cl.K 74.551 g/mol	0.335968 G_PER_L	CHEBI:32588 potassium chloride
2	MgCl2 x 6 H2O 2Cl.6H2O.Mg 203.301 g/mol	3.95257 G_PER_L	CHEBI:86345 magnesium dichloride hexahydrate
3	MgSO4 x 7 H2O 7H2O.Mg.O4S 246.473 g/mol	6.40909 G_PER_L	CHEBI:31795 magnesium sulfate heptahydrate	[Merged 2 duplicates: 3.40909, 3.0]
4	Na2SO4 2Na.O4S 142.043 g/mol	2.66798 G_PER_L	CHEBI:32149 sodium sulfate
5	NH4Cl Cl.H4N 53.492 g/mol	0.247036 G_PER_L	CHEBI:31206 ammonium chloride
6	CaCl2 x 2 H2O Ca.2Cl.2H2O 147.014 g/mol	0.23834 G_PER_L	CHEBI:86158 calcium chloride dihydrate	[Merged 2 duplicates: 0.13834, 0.1]
7	K2HPO4 HO4P.2K 174.174 g/mol	0.13834 G_PER_L	CHEBI:131527 dipotassium hydrogen phosphate
8	NaCl Cl.Na 58.443 g/mol	18.7866 G_PER_L	CHEBI:26710 sodium chloride	[Merged 2 duplicates: 17.7866, 1.0]
9	Yeast extract	0.494071 G_PER_L
10	Na-acetate C2H3O2.Na 82.034 g/mol	0.988142 G_PER_L	CHEBI:32954 sodium acetate
11	Fe(NH4)2(SO4)2 x 7 H2O Fe.7H2O.2H4N.2O4S 410.154 g/mol	0.00197628 G_PER_L	CHEBI:131378 ferrous ammonium sulfate heptahydrate
12	Sodium resazurin C12H7NO4 229.191 g/mol	0.000494071 G_PER_L	CHEBI:8806 Resazurin
13	NaHCO3 CHO3.Na 84.006 g/mol	0.988142 G_PER_L	CHEBI:32139 sodium hydrogencarbonate
14	Na2S x 9 H2O 9H2O.2Na.S 240.182 g/mol	0.494071 G_PER_L	CHEBI:76209 sodium sulfide nonahydrate
15	Nitrilotriacetic acid C6H9NO6 191.139 g/mol	1.5 G_PER_L	CHEBI:44557 nitrilotriacetic acid
16	MnSO4 x H2O H2O.Mn.O4S 169.016 g/mol	0.5 G_PER_L	CHEBI:86364 manganese(II) sulfate monohydrate
17	FeSO4 x 7 H2O Fe.7H2O.O4S 278.013 g/mol	0.1 G_PER_L	CHEBI:75836 iron(2+) sulfate heptahydrate
18	CoSO4 x 7 H2O Co.7H2O.O4S 281.101 g/mol	0.18 G_PER_L	CHEBI:91244 cobalt(2+) sulfate heptahydrate
19	ZnSO4 x 7 H2O 7H2O.O4S.Zn 287.558 g/mol	0.18 G_PER_L	CHEBI:32312 zinc sulfate heptahydrate
20	CuSO4 x 5 H2O Cu.5H2O.O4S 249.684 g/mol	0.01 G_PER_L	CHEBI:31440 copper(II) sulfate pentahydrate
21	AlK(SO4)2 x 12 H2O Al.12H2O.K.2O4S 474.386 g/mol	0.02 G_PER_L	CHEBI:86465 potassium aluminium sulfate dodecahydrate
22	H3BO3 H3BO3 61.833 g/mol	0.01 G_PER_L	CHEBI:33118 boric acid
23	Na2MoO4 x 2 H2O 2H2O.MoO4.2Na 241.946 g/mol	0.01 G_PER_L	CHEBI:75213 sodium molybdate dihydrate
24	NiCl2 x 6 H2O Cl2Ni 129.599 g/mol	0.03 G_PER_L	CHEBI:34887 nickel dichloride
25	Na2SeO3 x 5 H2O 5H2O.2Na.O3Se 263.012 g/mol	0.0003 G_PER_L	CHEBI:131361 disodium selenite pentahydrate
26	Na2WO4 x 2 H2O 2H2O.2Na.O4W 329.846 g/mol	0.0004 G_PER_L	CHEBI:63939 sodium tungstate dihydrate

Target organisms

No target organisms are recorded.

Provenance

Timestamp	Curator	Action	Notes
2026-01-27T01:15:03.fZ	komodo-web-import	Imported from KOMODO web table	Source: KOMODO, ID: 519
2026-02-03T11:19:04.933414	dsmz-resolver-v1.0	Enriched with DSMZ composition	Copied ingredients from DSMZ Medium 519
2026-03-13T03:09:04.847668Z	data-quality-cleanup-v1.0	Data quality fixes	Merged 3 duplicate ingredient(s)
2026-03-13T06:19:36.995780Z	culturemech-id-assigner-v1.0	Assigned CultureMech ID	Assigned stable identifier: CultureMech:005877
2026-03-17T06:30:10.000000Z	mediaingredientmech-enrichment-v1.0	Added MediaIngredientMech links	Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:53.633366+00:00	normalize_media_names_to_snake_case.py	NAME_NORMALIZED	Normalized name from "ARCHAEOGLOBUS PROFUNDUS medium" to "archaeoglobus_profundus_medium" for consistent matching
2026-06-05T07:40:24.336697+00:00	mim-legacy-to-chebi-migration-v1.0	Refreshed legacy MediaIngredientMech links to CHEBI keying	Replaced 24 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:45.216179+00:00	primary-term-label-canonicalization-v1.0	Canonicalized primary term label to OBO canonical (OAK)	5 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.