gphf_medium

CultureMech:006001 bacterial COMPLEX SOLID_AGAR
Original name: GPHF-MEDIUM

Overview

External ontology
komodo.medium:553 (source link unavailable) — GPHF-MEDIUM
Applications
  • Microbial cultivation
pH
7.2
Notes
Source: KOMODO ModelSEED | ID: 553 | DSMZ Medium: 553 (mediadive.medium:553) | Aerobic: No

Composition

flowchart LR
    CultureMech_006001["gphf_medium"]
    ing0_Glucose["Glucose"]
    CultureMech_006001 --> ing0_Glucose
    CHEBI_17234["CHEBI:17234"]
    ing0_Glucose -.-> CHEBI_17234
    ing1_Casein_peptone["Casein peptone"]
    CultureMech_006001 --> ing1_Casein_peptone
    ing2_Yeast_extract["Yeast extract"]
    CultureMech_006001 --> ing2_Yeast_extract
    ing3_Beef_extract["Beef extract"]
    CultureMech_006001 --> ing3_Beef_extract
    ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_006001 --> ing4_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing5_Agar["Agar"]
    CultureMech_006001 --> ing5_Agar
    CHEBI_2509["CHEBI:2509"]
    ing5_Agar -.-> CHEBI_2509

Ingredients (6)

# Ingredient Concentration Ontology Notes
1 Glucose
C6H12O6 180.156 g/mol
10 G_PER_L CHEBI:17234
glucose
2 Casein peptone 5 G_PER_L
3 Yeast extract 5 G_PER_L
4 Beef extract 5 G_PER_L
5 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.74 G_PER_L CHEBI:86158
calcium chloride dihydrate
6 Agar 20 G_PER_L CHEBI:2509
agar

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T01:15:03.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 553
2026-02-03T11:19:14.735185 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 553
2026-03-13T06:19:37.535005Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:006001
2026-03-17T06:30:41.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:54.328393+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "GPHF-MEDIUM" to "gphf_medium" for consistent matching
2026-06-05T07:40:24.579763+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-10-08T03:14:00.696534+00:00 codex CURATED_KOMODO_CONCENTRATION_SOURCE_EVIDENCE Exact medium/source membership, ingredient inventory/forms, physical-state conditions, literal snippets, and arithmetic checked. Stock boundaries, source-only rows, preparation context, and variants remain explicit follow-up tasks; secondary chemical mappings unchanged. KOMODO accession 553 is mapped to the same DSMZ accession by https://komodo.modelseed.org/servlet/KomodoTomcatServerSideUtilitiesModelSeed?MediaList; mapping response SHA256=d8259d98e6dbffdf6961a1ab92bc86f3567d5d96de352bfa079edb2a91e9580a. The mapping supports identity only, not ingredient quantities or variants.