aam_medium (CultureMech:006024)

Overview

External ontology

komodo.medium:57 (source link unavailable) — AAM medium

Applications

Microbial cultivation

pH

5.4

Notes

Source: KOMODO ModelSEED | ID: 57 | DSMZ Medium: 57 (mediadive.medium:57) | Aerobic: No

Composition

flowchart LR
    CultureMech_006024["aam_medium"]
    ing0_Tryptone["Tryptone"]
    CultureMech_006024 --> ing0_Tryptone
    ing1_Meat_extract["Meat extract"]
    CultureMech_006024 --> ing1_Meat_extract
    ing2_Yeast_extract["Yeast extract"]
    CultureMech_006024 --> ing2_Yeast_extract
    ing3_Tween_80["Tween 80"]
    CultureMech_006024 --> ing3_Tween_80
    CHEBI_53426["CHEBI:53426"]
    ing3_Tween_80 -.-> CHEBI_53426
    ing4_Na_acetate["Na-acetate"]
    CultureMech_006024 --> ing4_Na_acetate
    CHEBI_32954["CHEBI:32954"]
    ing4_Na_acetate -.-> CHEBI_32954
    ing5_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_006024 --> ing5_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing5_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing6_MnSO4_x_H2O["MnSO4 x H2O"]
    CultureMech_006024 --> ing6_MnSO4_x_H2O
    CHEBI_86364["CHEBI:86364"]
    ing6_MnSO4_x_H2O -.-> CHEBI_86364
    ing7_Casamino_acids["Casamino acids"]
    CultureMech_006024 --> ing7_Casamino_acids

Ingredients (8)

#	Ingredient	Concentration	Ontology
1	Tryptone	4.99501 G_PER_L
2	Meat extract	4.99501 G_PER_L
3	Yeast extract	6.99301 G_PER_L
4	Tween 80 (C2H4O)w.(C2H4O)x.(C2H4O)y.(C2H4O)z.C24H44O6 604.822 g/mol	1 G_PER_L	CHEBI:53426 polysorbate 80
5	Na-acetate C2H3O2.Na 82.034 g/mol	2.4975 G_PER_L	CHEBI:32954 sodium acetate
6	MgSO4 x 7 H2O 7H2O.Mg.O4S 246.473 g/mol	0.1998 G_PER_L	CHEBI:31795 magnesium sulfate heptahydrate
7	MnSO4 x H2O H2O.Mn.O4S 169.016 g/mol	0.04995 G_PER_L	CHEBI:86364 manganese(II) sulfate monohydrate
8	Casamino acids	6.99301 G_PER_L

Target organisms

No target organisms are recorded.

Provenance

Timestamp	Curator	Action	Notes
2026-01-27T01:15:03.fZ	komodo-web-import	Imported from KOMODO web table	Source: KOMODO, ID: 57
2026-02-03T11:19:17.790344	dsmz-resolver-v1.0	Enriched with DSMZ composition	Copied ingredients from DSMZ Medium 57
2026-03-13T06:19:37.706277Z	culturemech-id-assigner-v1.0	Assigned CultureMech ID	Assigned stable identifier: CultureMech:006024
2026-03-17T06:30:51.000000Z	mediaingredientmech-enrichment-v1.0	Added MediaIngredientMech links	Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:54.523258+00:00	normalize_media_names_to_snake_case.py	NAME_NORMALIZED	Normalized name from "AAM medium" to "aam_medium" for consistent matching
2026-06-05T07:40:24.679320+00:00	mim-legacy-to-chebi-migration-v1.0	Refreshed legacy MediaIngredientMech links to CHEBI keying	Replaced 5 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-08T23:19:28.355685+00:00	chebi-regrounding-v1.0	Corrected CHEBI ingredient grounding (audit G21/G22)	Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI).
2026-06-10T07:46:45.306936+00:00	primary-term-label-canonicalization-v1.0	Canonicalized primary term label to OBO canonical (OAK)	1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-10-07T20:30:39.950647+00:00	codex	CURATED_KOMODO_CONCENTRATION_SOURCE_EVIDENCE	Exact medium/source membership, ingredient inventory/forms, physical-state conditions, literal snippets, and arithmetic checked. Stock boundaries, source-only rows, preparation context, and variants remain explicit follow-up tasks; secondary chemical mappings unchanged. KOMODO accession 57 is mapped to the same DSMZ accession by https://komodo.modelseed.org/servlet/KomodoTomcatServerSideUtilitiesModelSeed?MediaList; mapping response SHA256=d8259d98e6dbffdf6961a1ab92bc86f3567d5d96de352bfa079edb2a91e9580a. The mapping supports identity only, not ingredient quantities or variants.