Overview
- External ontology
- komodo.medium:668 (source link unavailable) — FLEXIBACTER medium
- Applications
-
- Microbial cultivation
- Notes
- Source: KOMODO ModelSEED | ID: 668 | DSMZ Medium: 668 (mediadive.medium:668) | Aerobic: No
Composition
flowchart LR
CultureMech_006257["flexibacter_medium"]
ing0_Tryptone["Tryptone"]
CultureMech_006257 --> ing0_Tryptone
ing1_Vitamin_free_casamino_acids["Vitamin-free casamino acids"]
CultureMech_006257 --> ing1_Vitamin_free_casamino_acids
ing2_Na_glutamate["Na glutamate"]
CultureMech_006257 --> ing2_Na_glutamate
CHEBI_64220["CHEBI:64220"]
ing2_Na_glutamate -.-> CHEBI_64220
ing3_Sodium_glycerophosphate["Sodium glycerophosphate"]
CultureMech_006257 --> ing3_Sodium_glycerophosphate
ing4_Vitamin_B12["Vitamin B12"]
CultureMech_006257 --> ing4_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing4_Vitamin_B12 -.-> CHEBI_176843
ing5_Agar["Agar"]
CultureMech_006257 --> ing5_Agar
CHEBI_2509["CHEBI:2509"]
ing5_Agar -.-> CHEBI_2509
ing6_Sea_water["Sea water"]
CultureMech_006257 --> ing6_Sea_water
ing7_Na_tartrate["Na-tartrate"]
CultureMech_006257 --> ing7_Na_tartrate
CHEBI_63017["CHEBI:63017"]
ing7_Na_tartrate -.-> CHEBI_63017
ing8_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_006257 --> ing8_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing8_CuCl2_x_2_H2O -.-> CHEBI_86318
ing9_ZnCl2["ZnCl2"]
CultureMech_006257 --> ing9_ZnCl2
CHEBI_49976["CHEBI:49976"]
ing9_ZnCl2 -.-> CHEBI_49976
ing10_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_006257 --> ing10_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing10_CoCl2_x_6_H2O -.-> CHEBI_53503
ing11_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_006257 --> ing11_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing11_Na2MoO4_x_2_H2O -.-> CHEBI_75213
Ingredients (12)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Tryptone | 1 G_PER_L | ||
| 2 | Vitamin-free casamino acids | 1 G_PER_L | ||
| 3 |
Na glutamate
C5H8NO4.Na 169.112 g/mol
|
5 G_PER_L |
CHEBI:64220
monosodium glutamate
|
|
| 4 | Sodium glycerophosphate | 0.1 G_PER_L | ||
| 5 | Vitamin B12 | 1e-06 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 6 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
|
| 7 | Sea water | 1000 G_PER_L | ||
| 8 |
Na-tartrate
C4H4O6.2Na 194.05 g/mol
|
1.77 G_PER_L |
CHEBI:63017
sodium L-tartrate
|
|
| 9 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.0269 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 10 |
ZnCl2
2Cl.Zn 136.296 g/mol
|
0.0208 G_PER_L |
CHEBI:49976
zinc dichloride
|
|
| 11 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.0404 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 12 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.0252 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Solutions
Trace elements
Dose: 1 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| H3BO3 | 2.85 G_PER_L | |
| MnCl2 x 4 H2O | 1.8 G_PER_L | |
| FeSO4 | 1.36 G_PER_L |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 668 |
| 2026-02-03T11:19:06.058619 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 668 |
| 2026-03-13T06:19:39.322749Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006257 |
| 2026-03-17T06:30:15.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:56.413079+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "FLEXIBACTER medium" to "flexibacter_medium" for consistent matching |
| 2026-06-05T07:40:25.322957+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 11 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:45.512854+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-07T20:44:33.517097+00:00 | apply_cocktail_nesting.py | NESTED_FLATTENED_COCKTAIL | Moved 3 stock-strength component(s) out of ingredients into 1 solution(s): 3 -> 'Trace elements' @ 1 ml/l. Each moved component matched the MediaDive stock by name AND value; bulk ingredients sharing a name were left in place (#150). |