dethiosulfovibrio_peptidovorans_medium (CultureMech:006487)

Overview

External ontology

komodo.medium:786 (source link unavailable) — DETHIOSULFOVIBRIO PEPTIDOVORANS medium

Applications

Microbial cultivation

pH

7.3

Notes

Source: KOMODO ModelSEED | ID: 786 | DSMZ Medium: 786 (mediadive.medium:786) | Aerobic: Yes

Composition

flowchart LR
    CultureMech_006487["dethiosulfovibrio_peptidovorans_medium"]
    ing0_NH4Cl["NH4Cl"]
    CultureMech_006487 --> ing0_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing0_NH4Cl -.-> CHEBI_31206
    ing1_K2HPO4["K2HPO4"]
    CultureMech_006487 --> ing1_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing1_K2HPO4 -.-> CHEBI_131527
    ing2_KH2PO4["KH2PO4"]
    CultureMech_006487 --> ing2_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing2_KH2PO4 -.-> CHEBI_63036
    ing3_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_006487 --> ing3_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing3_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_006487 --> ing4_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing5_KCl["KCl"]
    CultureMech_006487 --> ing5_KCl
    CHEBI_32588["CHEBI:32588"]
    ing5_KCl -.-> CHEBI_32588
    ing6_Na_acetate["Na-acetate"]
    CultureMech_006487 --> ing6_Na_acetate
    CHEBI_32954["CHEBI:32954"]
    ing6_Na_acetate -.-> CHEBI_32954
    ing7_Yeast_extract["Yeast extract"]
    CultureMech_006487 --> ing7_Yeast_extract
    ing8_Trypticase_peptone["Trypticase peptone"]
    CultureMech_006487 --> ing8_Trypticase_peptone
    ing9_NaCl["NaCl"]
    CultureMech_006487 --> ing9_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing9_NaCl -.-> CHEBI_26710
    ing10_Sodium_resazurin["Sodium resazurin"]
    CultureMech_006487 --> ing10_Sodium_resazurin
    CHEBI_8806["CHEBI:8806"]
    ing10_Sodium_resazurin -.-> CHEBI_8806
    ing11_Na2CO3["Na2CO3"]
    CultureMech_006487 --> ing11_Na2CO3
    CHEBI_29377["CHEBI:29377"]
    ing11_Na2CO3 -.-> CHEBI_29377
    ing12_Na2S2O3_x_5_H2O["Na2S2O3 x 5 H2O"]
    CultureMech_006487 --> ing12_Na2S2O3_x_5_H2O
    CHEBI_32150["CHEBI:32150"]
    ing12_Na2S2O3_x_5_H2O -.-> CHEBI_32150
    ing13_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
    CultureMech_006487 --> ing13_L_Cysteine_HCl_x_H2O
    CHEBI_91248["CHEBI:91248"]
    ing13_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248
    ing14_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_006487 --> ing14_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing14_Na2S_x_9_H2O -.-> CHEBI_76209
    ing15_Nitrilotriacetic_acid["Nitrilotriacetic acid"]
    CultureMech_006487 --> ing15_Nitrilotriacetic_acid
    CHEBI_44557["CHEBI:44557"]
    ing15_Nitrilotriacetic_acid -.-> CHEBI_44557
    ing16_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_006487 --> ing16_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing16_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing17_MnSO4_x_H2O["MnSO4 x H2O"]
    CultureMech_006487 --> ing17_MnSO4_x_H2O
    CHEBI_86364["CHEBI:86364"]
    ing17_MnSO4_x_H2O -.-> CHEBI_86364
    ing18_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_006487 --> ing18_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing18_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing19_CoSO4_x_7_H2O["CoSO4 x 7 H2O"]
    CultureMech_006487 --> ing19_CoSO4_x_7_H2O
    CHEBI_91244["CHEBI:91244"]
    ing19_CoSO4_x_7_H2O -.-> CHEBI_91244
    ing20_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_006487 --> ing20_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing20_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing21_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
    CultureMech_006487 --> ing21_CuSO4_x_5_H2O
    CHEBI_31440["CHEBI:31440"]
    ing21_CuSO4_x_5_H2O -.-> CHEBI_31440
    ing22_AlK_SO4_2_x_12_H2O["AlK(SO4)2 x 12 H2O"]
    CultureMech_006487 --> ing22_AlK_SO4_2_x_12_H2O
    CHEBI_86465["CHEBI:86465"]
    ing22_AlK_SO4_2_x_12_H2O -.-> CHEBI_86465
    ing23_H3BO3["H3BO3"]
    CultureMech_006487 --> ing23_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing23_H3BO3 -.-> CHEBI_33118
    ing24_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_006487 --> ing24_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing24_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing25_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_006487 --> ing25_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing25_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing26_Na2SeO3_x_5_H2O["Na2SeO3 x 5 H2O"]
    CultureMech_006487 --> ing26_Na2SeO3_x_5_H2O
    CHEBI_131361["CHEBI:131361"]
    ing26_Na2SeO3_x_5_H2O -.-> CHEBI_131361
    ing27_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
    CultureMech_006487 --> ing27_Na2WO4_x_2_H2O
    CHEBI_63939["CHEBI:63939"]
    ing27_Na2WO4_x_2_H2O -.-> CHEBI_63939

Ingredients (28)

#	Ingredient	Concentration	Ontology	Notes
1	NH4Cl Cl.H4N 53.492 g/mol	1 G_PER_L	CHEBI:31206 ammonium chloride
2	K2HPO4 HO4P.2K 174.174 g/mol	0.3 G_PER_L	CHEBI:131527 dipotassium hydrogen phosphate
3	KH2PO4 H2O4P.K 136.084 g/mol	0.3 G_PER_L	CHEBI:63036 potassium dihydrogen phosphate
4	MgCl2 x 6 H2O 2Cl.6H2O.Mg 203.301 g/mol	3 G_PER_L	CHEBI:86345 magnesium dichloride hexahydrate
5	CaCl2 x 2 H2O Ca.2Cl.2H2O 147.014 g/mol	0.1 G_PER_L	CHEBI:86158 calcium chloride dihydrate	[Collapsed 2 identical duplicates: 0.1, 0.1]
6	KCl Cl.K 74.551 g/mol	0.1 G_PER_L	CHEBI:32588 potassium chloride
7	Na-acetate C2H3O2.Na 82.034 g/mol	0.5 G_PER_L	CHEBI:32954 sodium acetate
8	Yeast extract	1 G_PER_L
9	Trypticase peptone	5 G_PER_L
10	NaCl Cl.Na 58.443 g/mol	31.0 G_PER_L	CHEBI:26710 sodium chloride	[Merged 2 duplicates: 30.0, 1.0]
11	Sodium resazurin C12H7NO4 229.191 g/mol	0.0005 G_PER_L	CHEBI:8806 Resazurin
12	Na2CO3 CO3.2Na 105.988 g/mol	1.5 G_PER_L	CHEBI:29377 sodium carbonate
13	Na2S2O3 x 5 H2O 5H2O.2Na.O3S2 248.186 g/mol	5 G_PER_L	CHEBI:32150 sodium thiosulfate pentahydrate
14	L-Cysteine HCl x H2O C3H7NO2S.H2O.HCl 175.637 g/mol	0.5 G_PER_L	CHEBI:91248 L-cysteine hydrochloride hydrate
15	Na2S x 9 H2O 9H2O.2Na.S 240.182 g/mol	0.5 G_PER_L	CHEBI:76209 sodium sulfide nonahydrate
16	Nitrilotriacetic acid C6H9NO6 191.139 g/mol	1.5 G_PER_L	CHEBI:44557 nitrilotriacetic acid
17	MgSO4 x 7 H2O 7H2O.Mg.O4S 246.473 g/mol	3 G_PER_L	CHEBI:31795 magnesium sulfate heptahydrate
18	MnSO4 x H2O H2O.Mn.O4S 169.016 g/mol	0.5 G_PER_L	CHEBI:86364 manganese(II) sulfate monohydrate
19	FeSO4 x 7 H2O Fe.7H2O.O4S 278.013 g/mol	0.1 G_PER_L	CHEBI:75836 iron(2+) sulfate heptahydrate
20	CoSO4 x 7 H2O Co.7H2O.O4S 281.101 g/mol	0.18 G_PER_L	CHEBI:91244 cobalt(2+) sulfate heptahydrate
21	ZnSO4 x 7 H2O 7H2O.O4S.Zn 287.558 g/mol	0.18 G_PER_L	CHEBI:32312 zinc sulfate heptahydrate
22	CuSO4 x 5 H2O Cu.5H2O.O4S 249.684 g/mol	0.01 G_PER_L	CHEBI:31440 copper(II) sulfate pentahydrate
23	AlK(SO4)2 x 12 H2O Al.12H2O.K.2O4S 474.386 g/mol	0.02 G_PER_L	CHEBI:86465 potassium aluminium sulfate dodecahydrate
24	H3BO3 H3BO3 61.833 g/mol	0.01 G_PER_L	CHEBI:33118 boric acid
25	Na2MoO4 x 2 H2O 2H2O.MoO4.2Na 241.946 g/mol	0.01 G_PER_L	CHEBI:75213 sodium molybdate dihydrate
26	NiCl2 x 6 H2O Cl2Ni 129.599 g/mol	0.03 G_PER_L	CHEBI:34887 nickel dichloride
27	Na2SeO3 x 5 H2O 5H2O.2Na.O3Se 263.012 g/mol	0.0003 G_PER_L	CHEBI:131361 disodium selenite pentahydrate
28	Na2WO4 x 2 H2O 2H2O.2Na.O4W 329.846 g/mol	0.0004 G_PER_L	CHEBI:63939 sodium tungstate dihydrate

Target organisms

No target organisms are recorded.

Provenance

Timestamp	Curator	Action	Notes
2026-01-27T01:15:03.fZ	komodo-web-import	Imported from KOMODO web table	Source: KOMODO, ID: 786
2026-02-03T11:18:57.505426	dsmz-resolver-v1.0	Enriched with DSMZ composition	Copied ingredients from DSMZ Medium 786
2026-03-13T03:08:45.486634Z	data-quality-cleanup-v1.0	Data quality fixes	Merged 2 duplicate ingredient(s)
2026-03-13T06:19:41.245290Z	culturemech-id-assigner-v1.0	Assigned CultureMech ID	Assigned stable identifier: CultureMech:006487
2026-03-17T06:29:48.000000Z	mediaingredientmech-enrichment-v1.0	Added MediaIngredientMech links	Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:58.675749+00:00	normalize_media_names_to_snake_case.py	NAME_NORMALIZED	Normalized name from "DETHIOSULFOVIBRIO PEPTIDOVORANS medium" to "dethiosulfovibrio_peptidovorans_medium" for consistent matching
2026-06-05T07:40:26.368753+00:00	mim-legacy-to-chebi-migration-v1.0	Refreshed legacy MediaIngredientMech links to CHEBI keying	Replaced 25 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:45.861920+00:00	primary-term-label-canonicalization-v1.0	Canonicalized primary term label to OBO canonical (OAK)	6 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-09-02T07:37:39.452126+00:00	repair_merged_duplicates.py	REPAIRED_SUMMED_DUPLICATE_MERGE	Collapsed 1 ingredient row(s) whose concentration was the SUM of identical duplicate values written by cleanup_media_quality.py. Every merged part was the same value, so the pre-merge value is unambiguous and no source lookup was needed. Rows whose merged parts differ were left untouched.