Overview
- External ontology
- komodo.medium:797 (source link unavailable) — MODIFIED CHOPPED MEAT medium
- Applications
-
- Microbial cultivation
- pH
- 7.0
- Notes
- Source: KOMODO ModelSEED | ID: 797 | DSMZ Medium: 797 (mediadive.medium:797) | Aerobic: Yes
Composition
flowchart LR
CultureMech_006508["modified_chopped_meat_medium"]
ing0_Ground_beef["Ground beef"]
CultureMech_006508 --> ing0_Ground_beef
ing1_NaOH["NaOH"]
CultureMech_006508 --> ing1_NaOH
CHEBI_32145["CHEBI:32145"]
ing1_NaOH -.-> CHEBI_32145
ing2_Trypticase["Trypticase"]
CultureMech_006508 --> ing2_Trypticase
ing3_Yeast_extract["Yeast extract"]
CultureMech_006508 --> ing3_Yeast_extract
ing4_K2HPO4["K2HPO4"]
CultureMech_006508 --> ing4_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing4_K2HPO4 -.-> CHEBI_131527
ing5_Resazurin["Resazurin"]
CultureMech_006508 --> ing5_Resazurin
CHEBI_8806["CHEBI:8806"]
ing5_Resazurin -.-> CHEBI_8806
ing6_Agar["Agar"]
CultureMech_006508 --> ing6_Agar
CHEBI_2509["CHEBI:2509"]
ing6_Agar -.-> CHEBI_2509
ing7_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
CultureMech_006508 --> ing7_L_Cysteine_HCl_x_H2O
CHEBI_91248["CHEBI:91248"]
ing7_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248
ing8_Vitamin_K1["Vitamin K1"]
CultureMech_006508 --> ing8_Vitamin_K1
CHEBI_18067["CHEBI:18067"]
ing8_Vitamin_K1 -.-> CHEBI_18067
ing9_Ethanol["Ethanol"]
CultureMech_006508 --> ing9_Ethanol
CHEBI_16236["CHEBI:16236"]
ing9_Ethanol -.-> CHEBI_16236
ing10_Haemin["Haemin"]
CultureMech_006508 --> ing10_Haemin
CHEBI_50385["CHEBI:50385"]
ing10_Haemin -.-> CHEBI_50385
Ingredients (11)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Ground beef | 500 G_PER_L | ||
| 2 |
NaOH
HO.Na 39.997 g/mol
|
26.0 G_PER_L |
CHEBI:32145
sodium hydroxide
|
[Merged 2 duplicates: 25.0, 1.0] |
| 3 | Trypticase | 30 G_PER_L |
MICRO:0000175 (source link unavailable)
Trypticase peptone
|
|
| 4 | Yeast extract | 5 G_PER_L | ||
| 5 |
K2HPO4
HO4P.2K 174.174 g/mol
|
5 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 6 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.001 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 7 | Agar | 20 G_PER_L |
CHEBI:2509
agar
|
(if required) |
| 8 |
L-Cysteine HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
|
0.5 G_PER_L |
CHEBI:91248
L-cysteine hydrochloride hydrate
|
|
| 9 |
Vitamin K1
C31H46O2 450.707 g/mol
|
0.15 G_PER_L |
CHEBI:18067
phylloquinone
|
|
| 10 |
Ethanol
C2H6O 46.069 g/mol
|
28.5 G_PER_L |
CHEBI:16236
ethanol
|
|
| 11 |
Haemin
C34H32ClFeN4O4 651.952 g/mol
|
0.49505 G_PER_L |
CHEBI:50385
hemin
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 797 |
| 2026-02-03T11:19:17.131908 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 797 |
| 2026-03-13T03:09:37.125768Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:19:41.463744Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006508 |
| 2026-03-17T06:30:48.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:58.924893+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "MODIFIED CHOPPED MEAT medium" to "modified_chopped_meat_medium" for consistent matching |
| 2026-06-05T07:40:26.530300+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 8 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:45.923931+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-22T00:03:26.686152+00:00 | repair_rejected_peptone_groundings.py | CORRECTED_REJECTED_PEPTONE_GROUNDING | CultureMech #484. /ingredients/2/term/id: Trypticase CHEBI:78018 -> MICRO:0000175 (replace_term). Reviewed identities: https://github.com/CultureBotAI/MediaIngredientMech/tree/24562493919391df4468a4285b7c997960cc8868. Publication resolver: MIM label index 9f09e4fb97fb0e6cbbd6f25baca40b36512adb88. MediaDive source IDs and concentrations preserved. |