desulfovibrio_inopinatus_medium (CultureMech:006511)

Overview

External ontology

komodo.medium:799 (source link unavailable) — DESULFOVIBRIO INOPINATUS MEDIUM

Applications

Microbial cultivation

pH range

{'min': 7.1, 'max': 7.4}

Notes

Archived DSMZ Medium 799 defines DESULFOVIBRIO INOPINATUS MEDIUM as DSMZ Medium 193 supplemented with 1 mL/L DSMZ Medium 503 Seven Vitamins Solution, 1 mL/L DSMZ Medium 385 selenite-tungstate solution, 5 mL/L of a 10% yeast extract stock, and 10 mL/L of 25% Na-pyruvate replacing acetate; this record expands archived DSMZ Media 193, 320, 141, 385, 503, and 799 into final per-liter components.

Composition

flowchart LR
    CultureMech_006511["desulfovibrio_inopinatus_medium"]
    ing0_Na2SO4["Na2SO4"]
    CultureMech_006511 --> ing0_Na2SO4
    CHEBI_32149["CHEBI:32149"]
    ing0_Na2SO4 -.-> CHEBI_32149
    ing1_KH2PO4["KH2PO4"]
    CultureMech_006511 --> ing1_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing1_KH2PO4 -.-> CHEBI_63036
    ing2_NH4Cl["NH4Cl"]
    CultureMech_006511 --> ing2_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing2_NH4Cl -.-> CHEBI_31206
    ing3_NaCl["NaCl"]
    CultureMech_006511 --> ing3_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing3_NaCl -.-> CHEBI_26710
    ing4_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_006511 --> ing4_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing4_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing5_KCl["KCl"]
    CultureMech_006511 --> ing5_KCl
    CHEBI_32588["CHEBI:32588"]
    ing5_KCl -.-> CHEBI_32588
    ing6_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_006511 --> ing6_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing6_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing7_Resazurin["Resazurin"]
    CultureMech_006511 --> ing7_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing7_Resazurin -.-> CHEBI_8806
    ing8_HCl["HCl"]
    CultureMech_006511 --> ing8_HCl
    CHEBI_17883["CHEBI:17883"]
    ing8_HCl -.-> CHEBI_17883
    ing9_FeCl2_x_4_H2O["FeCl2 x 4 H2O"]
    CultureMech_006511 --> ing9_FeCl2_x_4_H2O
    CHEBI_86249["CHEBI:86249"]
    ing9_FeCl2_x_4_H2O -.-> CHEBI_86249
    ing10_ZnCl2["ZnCl2"]
    CultureMech_006511 --> ing10_ZnCl2
    CHEBI_49976["CHEBI:49976"]
    ing10_ZnCl2 -.-> CHEBI_49976
    ing11_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_006511 --> ing11_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing11_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing12_H3BO3["H3BO3"]
    CultureMech_006511 --> ing12_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing12_H3BO3 -.-> CHEBI_33118
    ing13_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_006511 --> ing13_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing13_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing14_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_006511 --> ing14_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing14_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing15_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_006511 --> ing15_NiCl2_x_6_H2O
    CHEBI_53542["CHEBI:53542"]
    ing15_NiCl2_x_6_H2O -.-> CHEBI_53542
    ing16_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_006511 --> ing16_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing16_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing17_NaHCO3["NaHCO3"]
    CultureMech_006511 --> ing17_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing17_NaHCO3 -.-> CHEBI_32139
    ing18_Na_pyruvate["Na-pyruvate"]
    CultureMech_006511 --> ing18_Na_pyruvate
    CHEBI_50144["CHEBI:50144"]
    ing18_Na_pyruvate -.-> CHEBI_50144
    ing19_Yeast_extract["Yeast extract"]
    CultureMech_006511 --> ing19_Yeast_extract
    ing20_Biotin["Biotin"]
    CultureMech_006511 --> ing20_Biotin
    CHEBI_15956["CHEBI:15956"]
    ing20_Biotin -.-> CHEBI_15956
    ing21_Folic_acid["Folic acid"]
    CultureMech_006511 --> ing21_Folic_acid
    CHEBI_27470["CHEBI:27470"]
    ing21_Folic_acid -.-> CHEBI_27470
    ing22_D____Biotin["D(+)-Biotin"]
    CultureMech_006511 --> ing22_D____Biotin
    ing22_D____Biotin -.-> CHEBI_15956
    ing23_Pyridoxine_HCl["Pyridoxine-HCl"]
    CultureMech_006511 --> ing23_Pyridoxine_HCl
    CHEBI_30961["CHEBI:30961"]
    ing23_Pyridoxine_HCl -.-> CHEBI_30961
    ing24_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
    CultureMech_006511 --> ing24_Thiamine_HCl_x_2_H2O
    CHEBI_132751["CHEBI:132751"]
    ing24_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
    ing25_Riboflavin["Riboflavin"]
    CultureMech_006511 --> ing25_Riboflavin
    CHEBI_17015["CHEBI:17015"]
    ing25_Riboflavin -.-> CHEBI_17015
    ing26_Nicotinic_acid["Nicotinic acid"]
    CultureMech_006511 --> ing26_Nicotinic_acid
    CHEBI_15940["CHEBI:15940"]
    ing26_Nicotinic_acid -.-> CHEBI_15940
    ing27_D_Ca_pantothenate["D-Ca-pantothenate"]
    CultureMech_006511 --> ing27_D_Ca_pantothenate
    CHEBI_31345["CHEBI:31345"]
    ing27_D_Ca_pantothenate -.-> CHEBI_31345
    ing28_Calcium_pantothenate["Calcium pantothenate"]
    CultureMech_006511 --> ing28_Calcium_pantothenate
    ing28_Calcium_pantothenate -.-> CHEBI_31345
    ing29_Vitamin_B12["Vitamin B12"]
    CultureMech_006511 --> ing29_Vitamin_B12
    CHEBI_176843["CHEBI:176843"]
    ing29_Vitamin_B12 -.-> CHEBI_176843
    CultureMech_006511 --> more["...9 more"]

Ingredients (39)

#	Ingredient	Concentration	Ontology	Notes
1	Na2SO4 2Na.O4S 142.043 g/mol	2.976190 G_PER_L	CHEBI:32149 sodium sulfate	Archived DSMZ Medium 193 contributes 3.00 g Na2SO4 to a 1008 mL final formulation, yielding 2.976190 g/L.
2	KH2PO4 H2O4P.K 136.084 g/mol	0.198413 G_PER_L	CHEBI:63036 potassium dihydrogen phosphate	Archived DSMZ Medium 193 contributes 0.20 g KH2PO4 to a 1008 mL final formulation, yielding 0.198413 g/L.
3	NH4Cl Cl.H4N 53.492 g/mol	0.297619 G_PER_L	CHEBI:31206 ammonium chloride	Archived DSMZ Medium 193 contributes 0.30 g NH4Cl to a 1008 mL final formulation, yielding 0.297619 g/L.
4	NaCl Cl.Na 58.443 g/mol	6.944444 G_PER_L	CHEBI:26710 sodium chloride	Archived DSMZ Medium 193 contributes 7.00 g NaCl to a 1008 mL final formulation, yielding 6.944444 g/L.
5	MgCl2 x 6 H2O 2Cl.6H2O.Mg 203.301 g/mol	1.289683 G_PER_L	CHEBI:86345 magnesium dichloride hexahydrate	Archived DSMZ Medium 193 contributes 1.30 g MgCl2 x 6 H2O to a 1008 mL final formulation, yielding 1.289683 g/L.
6	KCl Cl.K 74.551 g/mol	0.496032 G_PER_L	CHEBI:32588 potassium chloride	Archived DSMZ Medium 193 contributes 0.50 g KCl to a 1008 mL final formulation, yielding 0.496032 g/L.
7	CaCl2 x 2 H2O Ca.2Cl.2H2O 147.014 g/mol	0.148810 G_PER_L	CHEBI:86158 calcium chloride dihydrate	Archived DSMZ Medium 193 contributes 0.15 g CaCl2 x 2 H2O to a 1008 mL final formulation, yielding 0.148810 g/L.
8	Resazurin C12H7NO4 229.191 g/mol	0.000992 G_PER_L	CHEBI:8806 Resazurin	Archived DSMZ Medium 193 contributes 1.00 mg Resazurin to a 1008 mL final formulation, yielding 0.000992 g/L.
9	HCl HCl 36.461 g/mol	0.002480 G_PER_L	CHEBI:17883 hydrogen chloride	Archived DSMZ Medium 193 adds 1 mL of the Archived DSMZ Medium 320 SL-10 trace element solution to a 1008 mL final formulation; the SL-10 stock contains 2.50 g/L HCl, yielding 0.002480 g/L.
10	FeCl2 x 4 H2O Cl2Fe.4H2O 198.811 g/mol	0.001488 G_PER_L	CHEBI:86249 iron dichloride tetrahydrate	Archived DSMZ Medium 193 adds 1 mL of the Archived DSMZ Medium 320 SL-10 trace element solution to a 1008 mL final formulation; the SL-10 stock contains 1.50 g/L FeCl2 x 4 H2O, yielding 0.001488 g/L.
11	ZnCl2 2Cl.Zn 136.296 g/mol	0.0000694 G_PER_L	CHEBI:49976 zinc dichloride	Archived DSMZ Medium 193 adds 1 mL of the Archived DSMZ Medium 320 SL-10 trace element solution to a 1008 mL final formulation; the SL-10 stock contains 0.070 g/L ZnCl2, yielding 0.0000694 g/L.
12	MnCl2 x 4 H2O Cl2Mn.4H2O 197.904 g/mol	0.0000992 G_PER_L	CHEBI:86368 manganese(II) chloride tetrahydrate	Archived DSMZ Medium 193 adds 1 mL of the Archived DSMZ Medium 320 SL-10 trace element solution to a 1008 mL final formulation; the SL-10 stock contains 0.100 g/L MnCl2 x 4 H2O, yielding 0.0000992 g/L.
13	H3BO3 H3BO3 61.833 g/mol	0.00000595 G_PER_L	CHEBI:33118 boric acid	Archived DSMZ Medium 193 adds 1 mL of the Archived DSMZ Medium 320 SL-10 trace element solution to a 1008 mL final formulation; the SL-10 stock contains 0.006 g/L H3BO3, yielding 0.00000595 g/L.
14	CoCl2 x 6 H2O 2Cl.Co.6H2O 237.929 g/mol	0.000188 G_PER_L	CHEBI:53503 cobalt chloride hexahydrate	Archived DSMZ Medium 193 adds 1 mL of the Archived DSMZ Medium 320 SL-10 trace element solution to a 1008 mL final formulation; the SL-10 stock contains 0.190 g/L CoCl2 x 6 H2O, yielding 0.000188 g/L.
15	CuCl2 x 2 H2O Cl2Cu.2H2O 170.482 g/mol	0.00000198 G_PER_L	CHEBI:86318 copper(II) chloride dihydrate	Archived DSMZ Medium 193 adds 1 mL of the Archived DSMZ Medium 320 SL-10 trace element solution to a 1008 mL final formulation; the SL-10 stock contains 0.002 g/L CuCl2 x 2 H2O, yielding 0.00000198 g/L.
16	NiCl2 x 6 H2O 2Cl.6H2O.Ni 237.689 g/mol	0.0000238 G_PER_L	CHEBI:53542 nickel chloride hexahydrate	Archived DSMZ Medium 193 adds 1 mL of the Archived DSMZ Medium 320 SL-10 trace element solution to a 1008 mL final formulation; the SL-10 stock contains 0.024 g/L NiCl2 x 6 H2O, yielding 0.0000238 g/L.
17	Na2MoO4 x 2 H2O 2H2O.MoO4.2Na 241.946 g/mol	0.0000357 G_PER_L	CHEBI:75213 sodium molybdate dihydrate	Archived DSMZ Medium 193 adds 1 mL of the Archived DSMZ Medium 320 SL-10 trace element solution to a 1008 mL final formulation; the SL-10 stock contains 0.036 g/L Na2MoO4 x 2 H2O, yielding 0.0000357 g/L.
18	NaHCO3 CHO3.Na 84.006 g/mol	4.960317 G_PER_L	CHEBI:32139 sodium hydrogencarbonate	Archived DSMZ Medium 193 contributes 5.00 g NaHCO3 to a 1008 mL final formulation, yielding 4.960317 g/L.
19	Na-pyruvate C3H3O3.Na 110.044 g/mol	2.500000 G_PER_L	CHEBI:50144 sodium pyruvate	Archived DSMZ Medium 799 replaces acetate with 10 mL/L of 25% Na-pyruvate.
20	Yeast extract	0.500000 G_PER_L	FOODON:03315426 yeast extract	Archived DSMZ Medium 799 adds 5 mL/L of a 10% yeast extract stock.
21	Biotin C10H16N2O3S 244.316 g/mol	0.0000198 G_PER_L	CHEBI:15956 biotin	Archived DSMZ Medium 193 adds 10 mL of the Archived DSMZ Medium 141 vitamin solution to a 1008 mL final formulation; the vitamin stock contains 0.002 g/L Biotin, yielding 0.0000198 g/L.
22	Folic acid C19H19N7O6 441.404 g/mol	0.0000198 G_PER_L	CHEBI:27470 folic acid	Archived DSMZ Medium 193 adds 10 mL of the Archived DSMZ Medium 141 vitamin solution to a 1008 mL final formulation; the vitamin stock contains 0.002 g/L Folic acid, yielding 0.0000198 g/L.
23	D(+)-Biotin C10H16N2O3S 244.316 g/mol	0.0000198 G_PER_L	CHEBI:15956 biotin	Archived DSMZ Medium 799 uses 1 mL/L of the Archived DSMZ Medium 503 Seven Vitamins Solution; the Seven Vitamins stock contains 0.020 g/L D(+)-Biotin, yielding 0.0000198 g/L in the 1008 mL final formulation.
24	Pyridoxine-HCl C8H11NO3.HCl 205.641 g/mol	0.000397 G_PER_L	CHEBI:30961 pyridoxine hydrochloride	Archived DSMZ Medium 141 vitamin solution and Archived DSMZ Medium 503 Seven Vitamins Solution both contribute Pyridoxine-HCl; their scaled contributions of 0.0000992 and 0.000298 g/L yield 0.000397 g/L in the 1008 mL final formulation.
25	Thiamine-HCl x 2 H2O C12H18N4OS.2Cl.2H2O 373.306 g/mol	0.000248 G_PER_L	CHEBI:132751 Thiamine-HCl x 2 H2O	Archived DSMZ Medium 141 vitamin solution and Archived DSMZ Medium 503 Seven Vitamins Solution both contribute Thiamine-HCl x 2 H2O; their scaled contributions of 0.0000496 and 0.000198 g/L yield 0.000248 g/L in the 1008 mL final formulation.
26	Riboflavin C17H20N4O6 376.369 g/mol	0.0000496 G_PER_L	CHEBI:17015 riboflavin	Archived DSMZ Medium 193 adds 10 mL of the Archived DSMZ Medium 141 vitamin solution to a 1008 mL final formulation; the vitamin stock contains 0.005 g/L Riboflavin, yielding 0.0000496 g/L.
27	Nicotinic acid C6H5NO2 123.111 g/mol	0.000248 G_PER_L	CHEBI:15940 nicotinic acid	Archived DSMZ Medium 141 vitamin solution and Archived DSMZ Medium 503 Seven Vitamins Solution both contribute Nicotinic acid; their scaled contributions of 0.0000496 and 0.000198 g/L yield 0.000248 g/L in the 1008 mL final formulation.
28	D-Ca-pantothenate 2C9H16NO5.Ca 476.536 g/mol	0.0000496 G_PER_L	CHEBI:31345 Calcium pantothenate	Archived DSMZ Medium 193 adds 10 mL of the Archived DSMZ Medium 141 vitamin solution to a 1008 mL final formulation; the vitamin stock contains 0.005 g/L D-Ca-pantothenate, yielding 0.0000496 g/L.
29	Calcium pantothenate 2C9H16NO5.Ca 476.536 g/mol	0.0000992 G_PER_L	CHEBI:31345 Calcium pantothenate	Archived DSMZ Medium 799 uses 1 mL/L of the Archived DSMZ Medium 503 Seven Vitamins Solution; the Seven Vitamins stock contains 0.100 g/L Calcium pantothenate, yielding 0.0000992 g/L in the 1008 mL final formulation.
30	Vitamin B12	0.000100 G_PER_L	CHEBI:176843 vitamin B12	Archived DSMZ Medium 141 vitamin solution and Archived DSMZ Medium 503 Seven Vitamins Solution both contribute Vitamin B12; their scaled contributions of 0.000000992 and 0.0000992 g/L yield 0.000100 g/L in the 1008 mL final formulation.
31	p-Aminobenzoic acid C7H7NO2 137.138 g/mol	0.000129 G_PER_L	CHEBI:30753 4-aminobenzoic acid	Archived DSMZ Medium 141 vitamin solution and Archived DSMZ Medium 503 Seven Vitamins Solution both contribute p-Aminobenzoic acid; their scaled contributions of 0.0000496 and 0.0000794 g/L yield 0.000129 g/L in the 1008 mL final formulation.
32	Lipoic acid C8H14O2S2 206.332 g/mol	0.0000496 G_PER_L	CHEBI:16494 lipoic acid	Archived DSMZ Medium 193 adds 10 mL of the Archived DSMZ Medium 141 vitamin solution to a 1008 mL final formulation; the vitamin stock contains 0.005 g/L Lipoic acid, yielding 0.0000496 g/L.
33	Na2S x 9 H2O 9H2O.2Na.S 240.182 g/mol	0.396825 G_PER_L	CHEBI:76209 sodium sulfide nonahydrate	Archived DSMZ Medium 193 contributes 0.40 g Na2S x 9 H2O to a 1008 mL final formulation, yielding 0.396825 g/L.
34	NaOH HO.Na 39.997 g/mol	0.000496 G_PER_L	CHEBI:32145 sodium hydroxide	Archived DSMZ Medium 799 adds 1 mL/L of the Archived DSMZ Medium 385 selenite/tungsten solution; the stock contains 0.500 g/L NaOH, yielding 0.000496 g/L in the 1008 mL final formulation.
35	Na2SeO3 x 5 H2O 5H2O.2Na.O3Se 263.012 g/mol	0.00000298 G_PER_L	CHEBI:131361 disodium selenite pentahydrate	Archived DSMZ Medium 799 adds 1 mL/L of the Archived DSMZ Medium 385 selenite/tungsten solution; the stock contains 0.003 g/L Na2SeO3 x 5 H2O, yielding 0.00000298 g/L in the 1008 mL final formulation.
36	Na2WO4 x 2 H2O 2H2O.2Na.O4W 329.846 g/mol	0.00000397 G_PER_L	CHEBI:63939 sodium tungstate dihydrate	Archived DSMZ Medium 799 adds 1 mL/L of the Archived DSMZ Medium 385 selenite/tungsten solution; the stock contains 0.004 g/L Na2WO4 x 2 H2O, yielding 0.00000397 g/L in the 1008 mL final formulation.
37	CO2 CO2 44.009 g/mol	variable VARIABLE	CHEBI:16526 carbon dioxide	Archived DSMZ Medium 193 prepares the medium under 80% N2 and 20% CO2.
38	N2 N2 28.014 g/mol	variable VARIABLE	CHEBI:17997 dinitrogen	Archived DSMZ Medium 193 prepares the medium under 80% N2 and 20% CO2.
39	Distilled water H2O 18.015 g/mol	990.000 ML_PER_L	CHEBI:15377 water	Archived DSMZ Medium 193 lists 990 mL direct distilled water across solutions A, C, D, and F before Archived DSMZ Medium 799 stock additions.

Target organisms

No target organisms are recorded.

Provenance

Timestamp	Curator	Action	Notes
2026-01-27T01:15:03.fZ	komodo-web-import	Imported from KOMODO web table	Source: KOMODO, ID: 799
2026-03-13T06:19:41.480457Z	culturemech-id-assigner-v1.0	Assigned CultureMech ID	Assigned stable identifier: CultureMech:006511
2026-03-17T19:45:58.943738+00:00	normalize_media_names_to_snake_case.py	NAME_NORMALIZED	Normalized name from "DESULFOVIBRIO INOPINATUS MEDIUM" to "desulfovibrio_inopinatus_medium" for consistent matching
2026-08-06T08:58:32.427665+00:00	curate_flag_empty_composition.py	FLAGGED_INCOMPLETE_COMPOSITION	Media record has no ingredients and no solutions — no usable composition; flagged so the gap is not silent (#175).
2026-09-10T00:00:00-07:00	repair_komodo_799_score35.py	RESOLVED_KOMODO_799_SCORE35	Archived DSMZ Medium 799 defines DESULFOVIBRIO INOPINATUS MEDIUM as DSMZ Medium 193 supplemented with 1 mL/L DSMZ Medium 503 Seven Vitamins Solution, 1 mL/L DSMZ Medium 385 selenite-tungstate solution, 5 mL/L of a 10% yeast extract stock, and 10 mL/L of 25% Na-pyruvate replacing acetate; this record expands archived DSMZ Media 193, 320, 141, 385, 503, and 799 into final per-liter components.