alcanivorax_borkumensis_medium

CultureMech:006526 bacterial DEFINED LIQUID
Original name: ALCANIVORAX BORKUMENSIS MEDIUM

Overview

External ontology
komodo.medium:809 (source link unavailable) — ALCANIVORAX BORKUMENSIS MEDIUM
Applications
  • Microbial cultivation
pH range
{'min': 7.0, 'max': 7.5}
Notes
Source: KOMODO ModelSEED | ID: 809 | DSMZ Medium: 809 (mediadive.medium:809) | Aerobic: No

Composition

flowchart LR
    CultureMech_006526["alcanivorax_borkumensis_medium"]
    ing0_NaCl["NaCl"]
    CultureMech_006526 --> ing0_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing0_NaCl -.-> CHEBI_26710
    ing1_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_006526 --> ing1_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing1_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing2_MgCl2_x_2_H2O["MgCl2 x 2 H2O"]
    CultureMech_006526 --> ing2_MgCl2_x_2_H2O
    CHEBI_131394["CHEBI:131394"]
    ing2_MgCl2_x_2_H2O -.-> CHEBI_131394
    ing3_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_006526 --> ing3_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing3_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing4_Na2HPO4_x_7_H2O["Na2HPO4 x 7 H2O"]
    CultureMech_006526 --> ing4_Na2HPO4_x_7_H2O
    CHEBI_34683["CHEBI:34683"]
    ing4_Na2HPO4_x_7_H2O -.-> CHEBI_34683
    ing5_NaNO3["NaNO3"]
    CultureMech_006526 --> ing5_NaNO3
    CHEBI_63005["CHEBI:63005"]
    ing5_NaNO3 -.-> CHEBI_63005
    ing6_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_006526 --> ing6_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing6_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing7_Sodium_pyruvate["Sodium pyruvate"]
    CultureMech_006526 --> ing7_Sodium_pyruvate
    CHEBI_50144["CHEBI:50144"]
    ing7_Sodium_pyruvate -.-> CHEBI_50144

Ingredients (8)

# Ingredient Concentration Ontology Notes
1 NaCl
Cl.Na 58.443 g/mol
23 G_PER_L CHEBI:26710
sodium chloride
2 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
5.8 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
3 MgCl2 x 2 H2O
2Cl.2H2O.Mg 131.241 g/mol
6.16 G_PER_L CHEBI:131394
magnesium dichloride dihydrate
4 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
1.47 G_PER_L CHEBI:86158
calcium chloride dihydrate
5 Na2HPO4 x 7 H2O
HO4P.2Na 141.958 g/mol
0.89 G_PER_L CHEBI:34683
disodium hydrogenphosphate
6 NaNO3
NO3.Na 84.994 g/mol
5 G_PER_L CHEBI:63005
sodium nitrate
7 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.03 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
8 Sodium pyruvate
C3H3O3.Na 110.044 g/mol
10 G_PER_L CHEBI:50144
sodium pyruvate

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T01:15:03.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 809
2026-02-03T11:19:06.804145 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 809
2026-03-13T06:19:41.553607Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:006526
2026-03-17T06:30:17.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:59.030450+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "ALCANIVORAX BORKUMENSIS MEDIUM" to "alcanivorax_borkumensis_medium" for consistent matching
2026-05-20T06:00:53.987636+00:00 migrate_ph_range.py MIGRATED_PH_RANGE ph_range '7.0-7.5' -> {'min': 7.0, 'max': 7.5}
2026-06-05T07:40:26.625333+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 7 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-10-08T06:29:49.318246+00:00 codex CURATED_KOMODO_CONCENTRATION_SOURCE_EVIDENCE Exact medium/source membership, ingredient inventory/forms, physical-state conditions, literal snippets, and arithmetic checked. Stock boundaries, source-only rows, preparation context, and variants remain explicit follow-up tasks; secondary chemical mappings unchanged. KOMODO accession 809 is mapped to the same DSMZ accession by https://komodo.modelseed.org/servlet/KomodoTomcatServerSideUtilitiesModelSeed?MediaList; mapping response SHA256=d8259d98e6dbffdf6961a1ab92bc86f3567d5d96de352bfa079edb2a91e9580a. The mapping supports identity only, not ingredient quantities or variants.