Overview
- External ontology
- komodo.medium:874.1 (source link unavailable) — For DSM 16651
- Applications
-
- Microbial cultivation
- pH range
- {'min': 1.6, 'max': 1.8}
- High-metal flag
- True
- Notes
- pH buffer: H2SO4 | Source: KOMODO ModelSEED | ID: 874.1 | DSMZ Medium: 874 (mediadive.medium:874) | Aerobic: No
Composition
flowchart LR
CultureMech_006709["for_dsm_16651"]
ing0_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_006709 --> ing0_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing0_MgSO4_x_7_H2O -.-> CHEBI_31795
ing1__NH4_2SO4["(NH4)2SO4"]
CultureMech_006709 --> ing1__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing1__NH4_2SO4 -.-> CHEBI_62946
ing2_KCl["KCl"]
CultureMech_006709 --> ing2_KCl
CHEBI_32588["CHEBI:32588"]
ing2_KCl -.-> CHEBI_32588
ing3_K2HPO4["K2HPO4"]
CultureMech_006709 --> ing3_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing3_K2HPO4 -.-> CHEBI_131527
ing4_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_006709 --> ing4_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing4_FeSO4_x_7_H2O -.-> CHEBI_75836
ing5_H2SO4["H2SO4"]
CultureMech_006709 --> ing5_H2SO4
CHEBI_26836["CHEBI:26836"]
ing5_H2SO4 -.-> CHEBI_26836
ing6_Yeast_extract["Yeast extract"]
CultureMech_006709 --> ing6_Yeast_extract
ing7_FeCl3_x_6_H2O["FeCl3 x 6 H2O"]
CultureMech_006709 --> ing7_FeCl3_x_6_H2O
CHEBI_86254["CHEBI:86254"]
ing7_FeCl3_x_6_H2O -.-> CHEBI_86254
ing8_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_006709 --> ing8_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing8_MnCl2_x_4_H2O -.-> CHEBI_86368
ing9_Na2B4O7_x_10_H2O["Na2B4O7 x 10 H2O"]
CultureMech_006709 --> ing9_Na2B4O7_x_10_H2O
CHEBI_131366["CHEBI:131366"]
ing9_Na2B4O7_x_10_H2O -.-> CHEBI_131366
ing10_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_006709 --> ing10_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing10_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing11_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_006709 --> ing11_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing11_CuCl2_x_2_H2O -.-> CHEBI_86318
ing12_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_006709 --> ing12_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing12_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing13_VOSO4_x_5_H2O["VOSO4 x 5 H2O"]
CultureMech_006709 --> ing13_VOSO4_x_5_H2O
CHEBI_132758["CHEBI:132758"]
ing13_VOSO4_x_5_H2O -.-> CHEBI_132758
ing14_CoSO4_x_7_H2O["CoSO4 x 7 H2O"]
CultureMech_006709 --> ing14_CoSO4_x_7_H2O
CHEBI_91244["CHEBI:91244"]
ing14_CoSO4_x_7_H2O -.-> CHEBI_91244
Ingredients (15)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.430108 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 2 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
0.215054 G_PER_L |
CHEBI:62946
ammonium sulfate
|
|
| 3 |
KCl
Cl.K 74.551 g/mol
|
0.107527 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 4 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.107527 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 5 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
500 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 6 |
H2SO4
H2O4S 98.079 g/mol
|
40 G_PER_L |
CHEBI:26836
sulfuric acid
|
|
| 7 | Yeast extract | 20 G_PER_L | ||
| 8 |
FeCl3 x 6 H2O
Cl3Fe.6H2O 270.294 g/mol
|
1.93 G_PER_L |
CHEBI:86254
iron trichloride hexahydrate
|
|
| 9 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.18 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 10 |
Na2B4O7 x 10 H2O
10H2O.H4B4O9.2Na 417.401 g/mol
|
0.45 G_PER_L |
CHEBI:131366
disodium tetraborate decahydrate
|
|
| 11 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.022 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 12 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.005 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 13 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.003 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 14 |
VOSO4 x 5 H2O
5H2O.O4S.OV 253.081 g/mol
|
0.0038 G_PER_L |
CHEBI:132758
vanadyl sulfate pentahydrate
|
|
| 15 |
CoSO4 x 7 H2O
Co.7H2O.O4S 281.101 g/mol
|
0.002 G_PER_L |
CHEBI:91244
cobalt(2+) sulfate heptahydrate
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 874.1 |
| 2026-02-03T11:19:13.666908 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 874 |
| 2026-03-13T06:19:43.224977Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006709 |
| 2026-03-17T06:30:38.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:00.959094+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "For DSM 16651" to "for_dsm_16651" for consistent matching |
| 2026-05-20T06:01:18.412587+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '1.6-1.8' -> {'min': 1.6, 'max': 1.8} |
| 2026-06-05T07:41:02.599341+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 13 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:57.698493+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-13T00:00:00-07:00 | repair_komodo_874_ferroplasma_score10.py | RESOLVED_KOMODO_874_FERROPLASMA_TOPOLOGY | KOMODO Medium 874.1 applies FERROPLASMA ACIDIPHILUM medium to DSM 16651. |