Overview
- External ontology
- komodo.medium:9.1 (source link unavailable) — For DSM 11116
- Applications
-
- Microbial cultivation
- pH
- 7.2
- Notes
- pH buffer: KOH | Source: KOMODO ModelSEED | ID: 9.1 | DSMZ Medium: 9 (mediadive.medium:9) | Aerobic: No
Composition
flowchart LR
CultureMech_006764["for_dsm_11116"]
ing0_Baker_s_yeast["Baker's yeast"]
CultureMech_006764 --> ing0_Baker_s_yeast
ing1_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_006764 --> ing1_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing1_CaCl2_x_2_H2O -.-> CHEBI_86158
ing2_Vitamin_B12["Vitamin B12"]
CultureMech_006764 --> ing2_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing2_Vitamin_B12 -.-> CHEBI_176843
ing3_Agar["Agar"]
CultureMech_006764 --> ing3_Agar
CHEBI_2509["CHEBI:2509"]
ing3_Agar -.-> CHEBI_2509
ing4_KOH["KOH"]
CultureMech_006764 --> ing4_KOH
CHEBI_32035["CHEBI:32035"]
ing4_KOH -.-> CHEBI_32035
Ingredients (5)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Baker's yeast | 5 G_PER_L | ||
| 2 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
1.36 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 3 | Vitamin B12 | 0.0005 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 4 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
|
| 5 |
KOH
HO.K 56.105 g/mol
|
variable VARIABLE |
CHEBI:32035
potassium hydroxide
|
pH adjustment (extracted from notes) |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 9.1 |
| 2026-02-03T11:19:11.425529 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 9 |
| 2026-03-13T03:09:22.698153Z | data-quality-cleanup-v1.0 | Data quality fixes | Added pH buffer: KOH |
| 2026-03-13T06:19:43.739978Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006764 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: KOH |
| 2026-03-17T06:30:31.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:01.556915+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "For DSM 11116" to "for_dsm_11116" for consistent matching |
| 2026-05-16T09:03:32.211120+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:41:00.698242+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 4 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-09-13T00:00:00-07:00 | repair_komodo_9_vy2_score10.py | RESOLVED_KOMODO_9_VY2_TOPOLOGY | KOMODO Medium 9.1 applies VY/2 AGAR to DSM 11116. |