halorhabdus_utahensis_medium

CultureMech:006845 archaea COMPLEX LIQUID
Original name: HALORHABDUS UTAHENSIS medium

Overview

External ontology
komodo.medium:927 (source link unavailable) — HALORHABDUS UTAHENSIS medium
Applications
  • Microbial cultivation
pH
7.6
High-metal flag
True
Notes
pH buffer: NaOH | Source: KOMODO ModelSEED | ID: 927 | DSMZ Medium: 927 (mediadive.medium:927) | Aerobic: No

Composition

flowchart LR
    CultureMech_006845["halorhabdus_utahensis_medium"]
    ing0_NaCl["NaCl"]
    CultureMech_006845 --> ing0_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing0_NaCl -.-> CHEBI_26710
    ing1_NaBr["NaBr"]
    CultureMech_006845 --> ing1_NaBr
    CHEBI_63004["CHEBI:63004"]
    ing1_NaBr -.-> CHEBI_63004
    ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_006845 --> ing2_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing3_KCl["KCl"]
    CultureMech_006845 --> ing3_KCl
    CHEBI_32588["CHEBI:32588"]
    ing3_KCl -.-> CHEBI_32588
    ing4_NH4Cl["NH4Cl"]
    CultureMech_006845 --> ing4_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing4_NH4Cl -.-> CHEBI_31206
    ing5_Tris_HCl["Tris-HCl"]
    CultureMech_006845 --> ing5_Tris_HCl
    ing6_Yeast_extract["Yeast extract"]
    CultureMech_006845 --> ing6_Yeast_extract
    ing7_Glucose["Glucose"]
    CultureMech_006845 --> ing7_Glucose
    CHEBI_17234["CHEBI:17234"]
    ing7_Glucose -.-> CHEBI_17234
    ing8_HCl["HCl"]
    CultureMech_006845 --> ing8_HCl
    CHEBI_17883["CHEBI:17883"]
    ing8_HCl -.-> CHEBI_17883
    ing9_FeCl2_x_7_H2O["FeCl2 x 7 H2O"]
    CultureMech_006845 --> ing9_FeCl2_x_7_H2O
    CHEBI_30812["CHEBI:30812"]
    ing9_FeCl2_x_7_H2O -.-> CHEBI_30812
    ing10_ZnCl2["ZnCl2"]
    CultureMech_006845 --> ing10_ZnCl2
    CHEBI_49976["CHEBI:49976"]
    ing10_ZnCl2 -.-> CHEBI_49976
    ing11_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_006845 --> ing11_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing11_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing12_H3BO3["H3BO3"]
    CultureMech_006845 --> ing12_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing12_H3BO3 -.-> CHEBI_33118
    ing13_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_006845 --> ing13_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing13_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing14_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_006845 --> ing14_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing14_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing15_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_006845 --> ing15_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing15_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing16_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_006845 --> ing16_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing16_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing17_KH2PO4["KH2PO4"]
    CultureMech_006845 --> ing17_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing17_KH2PO4 -.-> CHEBI_63036
    ing18_CaCl2_x_6_H2O["CaCl2 x 6 H2O"]
    CultureMech_006845 --> ing18_CaCl2_x_6_H2O
    CHEBI_91243["CHEBI:91243"]
    ing18_CaCl2_x_6_H2O -.-> CHEBI_91243
    ing19_FeCl2_x_4_H2O["FeCl2 x 4 H2O"]
    CultureMech_006845 --> ing19_FeCl2_x_4_H2O
    CHEBI_86249["CHEBI:86249"]
    ing19_FeCl2_x_4_H2O -.-> CHEBI_86249
    ing20_NaOH["NaOH"]
    CultureMech_006845 --> ing20_NaOH
    CHEBI_32145["CHEBI:32145"]
    ing20_NaOH -.-> CHEBI_32145

Ingredients (21)

# Ingredient Concentration Ontology Notes
1 NaCl
Cl.Na 58.443 g/mol
270 G_PER_L CHEBI:26710
sodium chloride
2 NaBr
Br.Na 102.894 g/mol
0.1 G_PER_L CHEBI:63004
sodium bromide
3 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
20 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
4 KCl
Cl.K 74.551 g/mol
5 G_PER_L CHEBI:32588
potassium chloride
5 NH4Cl
Cl.H4N 53.492 g/mol
2 G_PER_L CHEBI:31206
ammonium chloride
6 Tris-HCl 12 G_PER_L
7 Yeast extract 1 G_PER_L
8 Glucose
C6H12O6 180.156 g/mol
2 G_PER_L CHEBI:17234
glucose
9 HCl
HCl 36.461 g/mol
6.5 G_PER_L CHEBI:17883
hydrogen chloride
10 FeCl2 x 7 H2O
Cl2Fe 126.751 g/mol
1.5 G_PER_L CHEBI:30812
iron dichloride
11 ZnCl2
2Cl.Zn 136.296 g/mol
70 MG_PER_L CHEBI:49976
zinc dichloride
12 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
100 MG_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
 [Unit conflict resolved: assumed G_PER_L was data entry error, kept MG_PER_L]
13 H3BO3
H3BO3 61.833 g/mol
62 MG_PER_L CHEBI:33118
boric acid
14 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
190 MG_PER_L CHEBI:53503
cobalt chloride hexahydrate
15 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
17 MG_PER_L CHEBI:86318
copper(II) chloride dihydrate
16 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
24 MG_PER_L CHEBI:34887
nickel dichloride
17 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
36 MG_PER_L CHEBI:75213
sodium molybdate dihydrate
18 KH2PO4
H2O4P.K 136.084 g/mol
50 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
19 CaCl2 x 6 H2O
Ca.2Cl.6H2O 219.074 g/mol
100 G_PER_L CHEBI:91243
calcium chloride hexahydrate
20 FeCl2 x 4 H2O
Cl2Fe.4H2O 198.811 g/mol
20 G_PER_L CHEBI:86249
iron dichloride tetrahydrate
21 NaOH
HO.Na 39.997 g/mol
variable VARIABLE CHEBI:32145
sodium hydroxide
 pH adjustment (extracted from notes)

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T01:15:03.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 927
2026-02-03T11:19:01.461535 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 927
2026-02-06T05:10:23.448461Z invalid-chebi-removal Removed 1 invalid CHEBI ID(s) Removed CHEBI IDs with invalid format (7+ digits) from MicrobeMediaParam source data
2026-03-13T03:08:55.521898Z data-quality-cleanup-v1.0 Data quality fixes Merged 1 duplicate ingredient(s); WARNING: Duplicate 'MnCl2 x 4 H2O' with different units: {'MG_PER_L', 'G_PER_L'}; Added pH buffer: NaOH
2026-03-13T04:23:43.716412Z unit-conflict-resolver-v1.0 Resolved unit conflicts Resolved trace metal unit conflict for MnCl2 x 4 H2O
2026-03-13T06:19:44.281634Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:006845
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: NaOH
2026-03-17T06:29:59.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:02.181371+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "HALORHABDUS UTAHENSIS medium" to "halorhabdus_utahensis_medium" for consistent matching
2026-05-16T09:03:05.485609+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=1
2026-06-05T07:40:27.842078+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 19 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:46.409039+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.