bm_in_arabinose_hodgson_et_al

CultureMech:007173 bacterial DEFINED LIQUID
Original name: Bm in arabinose; hodgson et al

Overview

External ontology
MEDIADB:273 (source link unavailable) — Bm in arabinose; hodgson et al
Applications
  • Cultivation of genome-sequenced organisms
  • Metabolic modeling
  • Systems biology research
Notes
Source: MediaDB (Chemically-defined media for genome-sequenced organisms) Reference: https://mediadb.systemsbiology.net/

Composition

flowchart LR
    CultureMech_007173["bm_in_arabinose_hodgson_et_al"]
    ing0_L_Arabinose["L-Arabinose"]
    CultureMech_007173 --> ing0_L_Arabinose
    CHEBI_30849["CHEBI:30849"]
    ing0_L_Arabinose -.-> CHEBI_30849
    ing1_Ethylene_glycol["Ethylene glycol"]
    CultureMech_007173 --> ing1_Ethylene_glycol
    CHEBI_30742["CHEBI:30742"]
    ing1_Ethylene_glycol -.-> CHEBI_30742
    ing2_Calcium_chloride_anhydrous["Calcium chloride anhydrous"]
    CultureMech_007173 --> ing2_Calcium_chloride_anhydrous
    CHEBI_3312["CHEBI:3312"]
    ing2_Calcium_chloride_anhydrous -.-> CHEBI_3312
    ing3_Potassium_dibasic_phosphate["Potassium dibasic phosphate"]
    CultureMech_007173 --> ing3_Potassium_dibasic_phosphate
    CHEBI_131527["CHEBI:131527"]
    ing3_Potassium_dibasic_phosphate -.-> CHEBI_131527
    ing4_Magnesium_sulfate["Magnesium sulfate"]
    CultureMech_007173 --> ing4_Magnesium_sulfate
    CHEBI_32599["CHEBI:32599"]
    ing4_Magnesium_sulfate -.-> CHEBI_32599
    ing5_Ferrous_sulfate["Ferrous sulfate"]
    CultureMech_007173 --> ing5_Ferrous_sulfate
    CHEBI_75832["CHEBI:75832"]
    ing5_Ferrous_sulfate -.-> CHEBI_75832
    ing6_Zinc_sulfate["Zinc sulfate"]
    CultureMech_007173 --> ing6_Zinc_sulfate
    CHEBI_35176["CHEBI:35176"]
    ing6_Zinc_sulfate -.-> CHEBI_35176
    ing7_Manganese_chloride["Manganese chloride"]
    CultureMech_007173 --> ing7_Manganese_chloride
    CHEBI_63041["CHEBI:63041"]
    ing7_Manganese_chloride -.-> CHEBI_63041
    ing8_Ammonium_nitrate["Ammonium nitrate"]
    CultureMech_007173 --> ing8_Ammonium_nitrate
    CHEBI_63038["CHEBI:63038"]
    ing8_Ammonium_nitrate -.-> CHEBI_63038

Ingredients (9)

# Ingredient Concentration Ontology Notes
1 L-Arabinose
C5H10O5 150.13 g/mol
10.0 MILLIMOLAR CHEBI:30849
L-arabinose
 Cross-references: KEGG:arab-L
2 Ethylene glycol
C2H6O2 62.068 g/mol
80.5542 MILLIMOLAR CHEBI:30742
ethylene glycol
3 Calcium chloride anhydrous
Ca.2Cl 110.984 g/mol
0.00901024 MILLIMOLAR CHEBI:3312
calcium dichloride
4 Potassium dibasic phosphate
HO4P.2K 174.174 g/mol
0.015 MILLIMOLAR CHEBI:131527
dipotassium hydrogen phosphate
5 Magnesium sulfate
Mg.O4S 120.368 g/mol
2.43437 MILLIMOLAR CHEBI:32599
magnesium sulfate
6 Ferrous sulfate
Fe.O4S 151.908 g/mol
0.00359648 MILLIMOLAR CHEBI:75832
iron(2+) sulfate (anhydrous)
7 Zinc sulfate
O4S.Zn 161.453 g/mol
0.0034779 MILLIMOLAR CHEBI:35176
zinc sulfate
8 Manganese chloride
Cl2Mn 125.844 g/mol
0.0044829 MILLIMOLAR CHEBI:63041
manganese(II) chloride
9 Ammonium nitrate
H4N.NO3 80.043 g/mol
24.9838 MILLIMOLAR CHEBI:63038
ammonium nitrate

Preparation

  1. Dissolve all ingredients in distilled water to specified concentrations
  2. Adjust pH if specified in original formulation
  3. Sterilize by filtration (0.22 μm) to preserve heat-sensitive components

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T07:21:45.129008Z mediadb-import Imported from MediaDB Source: MediaDB (Institute for Systems Biology), Medium ID: 273, Reference: Mazumdar et al. (2014) PLOS One
2026-03-13T06:19:46.581006Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007173
2026-03-17T06:30:26.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:04.751519+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Bm in arabinose; hodgson et al" to "bm_in_arabinose_hodgson_et_al" for consistent matching
2026-06-05T07:40:51.202129+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 4 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-08-20T19:01:35.468882+00:00 apply_mim_groundings.py Adopted MIM published grounding Grounded 1 ingredient(s) from MIM's ingredient_mappings.sssom.tsv (2026-08-18), exactMatch only, where this record carried no CHEBI term (#308).