batch_cultivation_medium_for_ta1

CultureMech:007209 bacterial DEFINED LIQUID
Original name: Batch Cultivation Medium (for TA1)

Overview

External ontology
MEDIADB:310 (source link unavailable) — Batch Cultivation Medium (for TA1)
Applications
  • Cultivation of genome-sequenced organisms
  • Metabolic modeling
  • Systems biology research
Notes
Source: MediaDB (Chemically-defined media for genome-sequenced organisms) Reference: https://mediadb.systemsbiology.net/

Composition

flowchart LR
    CultureMech_007209["batch_cultivation_medium_for_ta1"]
    ing0_Ferrous_sulfate["Ferrous sulfate"]
    CultureMech_007209 --> ing0_Ferrous_sulfate
    CHEBI_75832["CHEBI:75832"]
    ing0_Ferrous_sulfate -.-> CHEBI_75832
    ing1_Nickel_chloride["Nickel chloride"]
    CultureMech_007209 --> ing1_Nickel_chloride
    CHEBI_34887["CHEBI:34887"]
    ing1_Nickel_chloride -.-> CHEBI_34887
    ing2_Xylose["Xylose"]
    CultureMech_007209 --> ing2_Xylose
    CHEBI_18222["CHEBI:18222"]
    ing2_Xylose -.-> CHEBI_18222
    ing3_Calcium_chloride_anhydrous["Calcium chloride anhydrous"]
    CultureMech_007209 --> ing3_Calcium_chloride_anhydrous
    CHEBI_3312["CHEBI:3312"]
    ing3_Calcium_chloride_anhydrous -.-> CHEBI_3312
    ing4_Sodium_chloride["Sodium chloride"]
    CultureMech_007209 --> ing4_Sodium_chloride
    CHEBI_26710["CHEBI:26710"]
    ing4_Sodium_chloride -.-> CHEBI_26710
    ing5_Cupric_sulfate["Cupric sulfate"]
    CultureMech_007209 --> ing5_Cupric_sulfate
    CHEBI_23414["CHEBI:23414"]
    ing5_Cupric_sulfate -.-> CHEBI_23414
    ing6_Zinc_sulfate["Zinc sulfate"]
    CultureMech_007209 --> ing6_Zinc_sulfate
    CHEBI_35176["CHEBI:35176"]
    ing6_Zinc_sulfate -.-> CHEBI_35176
    ing7_Magnesium_sulfate["Magnesium sulfate"]
    CultureMech_007209 --> ing7_Magnesium_sulfate
    CHEBI_32599["CHEBI:32599"]
    ing7_Magnesium_sulfate -.-> CHEBI_32599
    ing8_Potassium_dihydrogen_phosphate["Potassium dihydrogen phosphate"]
    CultureMech_007209 --> ing8_Potassium_dihydrogen_phosphate
    CHEBI_63036["CHEBI:63036"]
    ing8_Potassium_dihydrogen_phosphate -.-> CHEBI_63036
    ing9_Ammonium_sulfate["Ammonium sulfate"]
    CultureMech_007209 --> ing9_Ammonium_sulfate
    CHEBI_62946["CHEBI:62946"]
    ing9_Ammonium_sulfate -.-> CHEBI_62946

Ingredients (10)

# Ingredient Concentration Ontology Notes
1 Ferrous sulfate
Fe.O4S 151.908 g/mol
0.08122 MILLIMOLAR CHEBI:75832
iron(2+) sulfate (anhydrous)
2 Nickel chloride
Cl2Ni 129.599 g/mol
0.002104 MILLIMOLAR CHEBI:34887
nickel dichloride
3 Xylose
C5H10O5 150.13 g/mol
66.61 MILLIMOLAR CHEBI:18222
xylose
4 Calcium chloride anhydrous
Ca.2Cl 110.984 g/mol
1.36 MILLIMOLAR CHEBI:3312
calcium dichloride
5 Sodium chloride
Cl.Na 58.443 g/mol
34.22 MILLIMOLAR CHEBI:26710
sodium chloride
6 Cupric sulfate
Cu.O4S 159.609 g/mol
0.01001 MILLIMOLAR CHEBI:23414
copper(II) sulfate
7 Zinc sulfate
O4S.Zn 161.453 g/mol
0.07969 MILLIMOLAR CHEBI:35176
zinc sulfate
8 Magnesium sulfate
Mg.O4S 120.368 g/mol
8.115 MILLIMOLAR CHEBI:32599
magnesium sulfate
9 Potassium dihydrogen phosphate
H2O4P.K 136.084 g/mol
22.04 MILLIMOLAR CHEBI:63036
potassium dihydrogen phosphate
10 Ammonium sulfate
2H4N.O4S 132.141 g/mol
113.5 MILLIMOLAR CHEBI:62946
ammonium sulfate

Preparation

  1. Dissolve all ingredients in distilled water to specified concentrations
  2. Adjust pH if specified in original formulation
  3. Sterilize by filtration (0.22 μm) to preserve heat-sensitive components

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T07:21:45.420017Z mediadb-import Imported from MediaDB Source: MediaDB (Institute for Systems Biology), Medium ID: 310, Reference: Mazumdar et al. (2014) PLOS One
2026-03-13T06:19:46.884647Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007209
2026-03-17T06:30:12.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:05.068235+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "'Batch Cultivation Medium (for TA1" to "batch_cultivation_medium_for_ta1" for consistent matching
2026-06-05T07:40:50.619059+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 5 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-08-31T06:17:21.677836+00:00 repair_mediadb_names.py REPAIRED_MEDIADB_TRUNCATED_NAME Restored the medium's own name in media_term.term.label, original_name. The MediaDB SQL parser truncated every value containing a parenthesis at that parenthesis; recovered from media_database.07Oct2015.sql.