Overview
- External ontology
- nbrc.medium:1257 (source link unavailable) — NBRC Medium 1257
- pH range
- {'min': 6.8, 'max': 7.0}
- Notes
- Source: NBRC Medium 1257 | Link: https://www.nite.go.jp/nbrc/catalogue/NBRCMediumDetailServlet?NO=1257 The NBRC Medium for Strain SR45 table lists pH 6.8 to 7.0, four nested stock solutions, and aseptic anaerobic addition of bicarbonate and sulfide solutions after sealed-vessel autoclaving.
Composition
flowchart LR
CultureMech_007467["1261"]
ing0_KH2PO4["KH2PO4"]
CultureMech_007467 --> ing0_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing0_KH2PO4 -.-> CHEBI_63036
ing1_NH4Cl["NH4Cl"]
CultureMech_007467 --> ing1_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing1_NH4Cl -.-> CHEBI_31206
ing2_NaCl["NaCl"]
CultureMech_007467 --> ing2_NaCl
CHEBI_26710["CHEBI:26710"]
ing2_NaCl -.-> CHEBI_26710
ing3_MgCl2_6H2O["MgCl2·6H2O"]
CultureMech_007467 --> ing3_MgCl2_6H2O
CHEBI_86345["CHEBI:86345"]
ing3_MgCl2_6H2O -.-> CHEBI_86345
ing4_KCl["KCl"]
CultureMech_007467 --> ing4_KCl
CHEBI_32588["CHEBI:32588"]
ing4_KCl -.-> CHEBI_32588
ing5_CaCl2_2H2O["CaCl2·2H2O"]
CultureMech_007467 --> ing5_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing5_CaCl2_2H2O -.-> CHEBI_86158
ing6_Na2SO4["Na2SO4"]
CultureMech_007467 --> ing6_Na2SO4
CHEBI_32149["CHEBI:32149"]
ing6_Na2SO4 -.-> CHEBI_32149
ing7_Yeast_extract["Yeast extract"]
CultureMech_007467 --> ing7_Yeast_extract
ing8_Resazurin["Resazurin"]
CultureMech_007467 --> ing8_Resazurin
CHEBI_8806["CHEBI:8806"]
ing8_Resazurin -.-> CHEBI_8806
ing9_Sodium_acetate["Sodium acetate"]
CultureMech_007467 --> ing9_Sodium_acetate
CHEBI_32954["CHEBI:32954"]
ing9_Sodium_acetate -.-> CHEBI_32954
ing10_Trace_element_mixture_["Trace element mixture*"]
CultureMech_007467 --> ing10_Trace_element_mixture_
ing11_Selenite_tungstate_solution__["Selenite-tungstate solution**"]
CultureMech_007467 --> ing11_Selenite_tungstate_solution__
ing12_Bicarbonate_solution___["Bicarbonate solution***"]
CultureMech_007467 --> ing12_Bicarbonate_solution___
ing13_Sulfide_solution____["Sulfide solution****"]
CultureMech_007467 --> ing13_Sulfide_solution____
ing14_Distilled_water["Distilled water"]
CultureMech_007467 --> ing14_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing14_Distilled_water -.-> CHEBI_15377
Ingredients (15)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.2 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 2 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.25 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 3 |
NaCl
Cl.Na 58.443 g/mol
|
1 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 4 |
MgCl2·6H2O
2Cl.6H2O.Mg 203.301 g/mol
|
0.4 G_PER_L |
CHEBI:86345
MgCl2 x 6 H2O
|
|
| 5 |
KCl
Cl.K 74.551 g/mol
|
0.5 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 6 |
CaCl2·2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.15 G_PER_L |
CHEBI:86158
CaCl2 x 2 H2O
|
|
| 7 |
Na2SO4
2Na.O4S 142.043 g/mol
|
4 G_PER_L |
CHEBI:32149
sodium sulfate
|
|
| 8 | Yeast extract | 1 G_PER_L |
FOODON:03315426
Yeast extract
|
|
| 9 |
Resazurin
C12H7NO4 229.191 g/mol
|
1 MG_PER_L |
CHEBI:8806
Resazurin
|
|
| 10 |
Sodium acetate
C2H3O2.Na 82.034 g/mol
|
2.73 G_PER_L |
CHEBI:32954
sodium acetate
|
|
| 11 | Trace element mixture* | 1 ML_PER_L | ||
| 12 | Selenite-tungstate solution** | 1 ML_PER_L | ||
| 13 | Bicarbonate solution*** | 30 ML_PER_L | ||
| 14 | Sulfide solution**** | 1.5 ML_PER_L | ||
| 15 |
Distilled water
H2O 18.015 g/mol
|
970 ML_PER_L |
CHEBI:15377
water
|
Preparation
- Mix ingredients except for bicarbonate and sulfide solutions.
- Dispense the medium into culture vessels under a stream of nitrogen gas and seal with butyl rubber stoppers.
- Autoclave at 121 C for 15 minutes.
- Aseptically and anaerobically add the remaining ingredients using sterile syringes and enclose N2/CO2 (80/20) mixed gas with the vessels.
- Adjust pH to 6.8-7.0 using a compact pH meter.
Solutions
Trace element mixture
| Ingredient | Concentration | Notes |
|---|---|---|
| HCl (25%; 7.7 M) | 12.5 ML_PER_L | |
| FeSO4·7H2O | 2100 MG_PER_L | |
| H3BO3 | 30 MG_PER_L | |
| MnCl2·4H2O | 100 MG_PER_L | |
| CoCl2·6H2O | 190 MG_PER_L | |
| NiCl2·6H2O | 24 MG_PER_L | |
| CuCl2·2H2O | 2 MG_PER_L | |
| ZnSO4·7H2O | 144 MG_PER_L | |
| Na2MoO4·2H2O | 36 MG_PER_L | |
| Distilled water | 987 ML_PER_L |
Selenite-tungstate solution
| Ingredient | Concentration | Notes |
|---|---|---|
| NaOH | 0.4 G_PER_L | |
| Na2SeO3·5H2O | 6 MG_PER_L | |
| Na2WO4·2H2O | 8 MG_PER_L | |
| Distilled water | 1 L |
Bicarbonate solution (1.0 M)
| Ingredient | Concentration | Notes |
|---|---|---|
| NaHCO3 | 8.4 G_PER_L | |
| Distilled water | 100 ML_PER_L |
Sulfide solution (1.0 M)
| Ingredient | Concentration | Notes |
|---|---|---|
| Na2S·9H2O | 12 G_PER_L | |
| Distilled water | 50 ML_PER_L |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-02-20T00:22:36.043616Z | nbrc-import | Imported from NBRC | Source: NBRC, Media No. 1257, URL: http://www.nbrc.nite.go.jp/NBRC2/NBRCMediumDetailServlet?NO=1257. Imported via ethical web scraping. |
| 2026-03-09T08:04:19.615416+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 1 solution(s) from ingredients |
| 2026-03-13T03:08:47.461765Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 92 duplicate ingredient(s) |
| 2026-03-13T06:19:49.173592Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007467 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name |
| 2026-05-16T09:03:06.618266+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-08-19T21:54:22.698945+00:00 | recover_nbrc_composition.py | Recovered composition from source HTML | Re-parsed the NBRC medium 1257 composition table from the preserved scrape; 15 ingredient(s) restored, 4 stock solution(s) nested rather than flattened, 1 unparsed solution blob(s) removed (#299). |
| 2026-08-20T19:01:15.841315+00:00 | apply_mim_groundings.py | Adopted MIM published grounding | Grounded 15 ingredient(s) from MIM's ingredient_mappings.sssom.tsv (2026-08-18), exactMatch only, where this record carried no CHEBI term (#308). |
| 2026-09-07T00:00:00-07:00 | repair_nbrc_partial_score25.py | RESOLVED_NBRC_PARTIAL_SCORE25 | Preserved the recovered NBRC Medium 1257 composition table. |