Overview
- External ontology
- nbrc.medium:279 (source link unavailable) — NBRC Medium 279
- pH
- 7.0
- Notes
- Source: NBRC Medium 279 | Link: https://www.nite.go.jp/nbrc/catalogue/NBRCMediumDetailServlet?NO=279 NBRC lists Tryptone Yeast Extract Agar (TYG) with Bacto Tryptone (Difco), yeast extract, glucose, distilled water, and agar at final pH 7.0.
Composition
flowchart LR
CultureMech_007484["Tryptone Yeast Extract Agar (TYG)"]
ing0_Bacto_Tryptone__Difco_["Bacto Tryptone (Difco)"]
CultureMech_007484 --> ing0_Bacto_Tryptone__Difco_
ing1_Yeast_extract["Yeast extract"]
CultureMech_007484 --> ing1_Yeast_extract
ing2_Glucose["Glucose"]
CultureMech_007484 --> ing2_Glucose
CHEBI_17234["CHEBI:17234"]
ing2_Glucose -.-> CHEBI_17234
ing3_Distilled_water["Distilled water"]
CultureMech_007484 --> ing3_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing3_Distilled_water -.-> CHEBI_15377
ing4_Agar["Agar"]
CultureMech_007484 --> ing4_Agar
CHEBI_2509["CHEBI:2509"]
ing4_Agar -.-> CHEBI_2509
Ingredients (5)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Bacto Tryptone (Difco) | 3 G_PER_L | ||
| 2 | Yeast extract | 5 G_PER_L | ||
| 3 |
Glucose
C6H12O6 180.156 g/mol
|
5 G_PER_L |
CHEBI:17234
glucose
|
|
| 4 |
Distilled water
H2O 18.015 g/mol
|
1 L |
CHEBI:15377
water
|
|
| 5 | Agar | 20 G_PER_L |
CHEBI:2509
agar
|
Preparation
- Dissolve ingredients in distilled water
- Adjust pH if needed
- Sterilize by autoclaving
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-02-20T00:22:35.946909Z | nbrc-import | Imported from NBRC | Source: NBRC, Media No. 279, URL: http://www.nbrc.nite.go.jp/NBRC2/NBRCMediumDetailServlet?NO=279. Imported via ethical web scraping. |
| 2026-03-13T03:09:21.233933Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 5 duplicate ingredient(s) |
| 2026-03-13T06:19:49.223517Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007484 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: Bacto Tryptone (Difco)3gYeast extract5gGlucose5gDistilled water1LAgar20gpH 7.0 |
| 2026-05-16T09:03:06.676783+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-08-19T21:54:22.863423+00:00 | recover_nbrc_composition.py | Recovered composition from source HTML | Re-parsed the NBRC medium 279 composition table from the preserved scrape; 5 ingredient(s) restored, 0 stock solution(s) nested rather than flattened, 0 unparsed solution blob(s) removed (#299). |
| 2026-08-20T19:01:15.970834+00:00 | apply_mim_groundings.py | Adopted MIM published grounding | Grounded 3 ingredient(s) from MIM's ingredient_mappings.sssom.tsv (2026-08-18), exactMatch only, where this record carried no CHEBI term (#308). |
| 2026-09-11T00:00:00-07:00 | repair_nbrc_280_score15.py | RESOLVED_NBRC_280_SCORE15 | Added the NBRC Medium 279 source term and official title, structured the final pH, added the official NBRC reference, and mirrored CHEBI terms for glucose, distilled water, and agar into MediaIngredientMech mappings. |