Overview
- External ontology
- nbrc.medium:392 (source link unavailable) — NBRC Medium 392
- pH
- 6.9
- Notes
- Source: NBRC Medium 392 | Link: https://www.nite.go.jp/nbrc/catalogue/NBRCMediumDetailServlet?NO=392 The NBRC Archaeoglobus Medium table lists final pH 6.9 after bicarbonate addition, anaerobic N2/CO2 preparation in sealed serum bottles, sodium sulfide reduction before use, and a nested trace element solution brought to pH 7.0 with KOH.
Composition
flowchart LR
CultureMech_007492["393"]
ing0_KCl["KCl"]
CultureMech_007492 --> ing0_KCl
CHEBI_32588["CHEBI:32588"]
ing0_KCl -.-> CHEBI_32588
ing1_MgCl2_6H2O["MgCl2·6H2O"]
CultureMech_007492 --> ing1_MgCl2_6H2O
CHEBI_86345["CHEBI:86345"]
ing1_MgCl2_6H2O -.-> CHEBI_86345
ing2_MgSO4_7H2O["MgSO4·7H2O"]
CultureMech_007492 --> ing2_MgSO4_7H2O
ing3_NH4Cl["NH4Cl"]
CultureMech_007492 --> ing3_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing3_NH4Cl -.-> CHEBI_31206
ing4_CaCl2_2H2O["CaCl2·2H2O"]
CultureMech_007492 --> ing4_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing4_CaCl2_2H2O -.-> CHEBI_86158
ing5_K2HPO4["K2HPO4"]
CultureMech_007492 --> ing5_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing5_K2HPO4 -.-> CHEBI_131527
ing6_NaCl["NaCl"]
CultureMech_007492 --> ing6_NaCl
CHEBI_26710["CHEBI:26710"]
ing6_NaCl -.-> CHEBI_26710
ing7_NaHCO3["NaHCO3"]
CultureMech_007492 --> ing7_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing7_NaHCO3 -.-> CHEBI_32139
ing8_Bacto_Yeast_Extract__Difco_["Bacto Yeast Extract (Difco)"]
CultureMech_007492 --> ing8_Bacto_Yeast_Extract__Difco_
ing9_Sodium_lactate["Sodium lactate"]
CultureMech_007492 --> ing9_Sodium_lactate
CHEBI_75228["CHEBI:75228"]
ing9_Sodium_lactate -.-> CHEBI_75228
ing10_Fe_NH4_2_SO4_2_7H2O["Fe(NH4)2(SO4)2·7H2O"]
CultureMech_007492 --> ing10_Fe_NH4_2_SO4_2_7H2O
CHEBI_131378["CHEBI:131378"]
ing10_Fe_NH4_2_SO4_2_7H2O -.-> CHEBI_131378
ing11_Trace_element_solution_["Trace element solution*"]
CultureMech_007492 --> ing11_Trace_element_solution_
ing12_Resazurin["Resazurin"]
CultureMech_007492 --> ing12_Resazurin
CHEBI_8806["CHEBI:8806"]
ing12_Resazurin -.-> CHEBI_8806
ing13_Na2S_9H2O["Na2S·9H2O"]
CultureMech_007492 --> ing13_Na2S_9H2O
CHEBI_76209["CHEBI:76209"]
ing13_Na2S_9H2O -.-> CHEBI_76209
ing14_Distilled_water["Distilled water"]
CultureMech_007492 --> ing14_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing14_Distilled_water -.-> CHEBI_15377
Ingredients (15)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
KCl
Cl.K 74.551 g/mol
|
0.34 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 2 |
MgCl2·6H2O
2Cl.6H2O.Mg 203.301 g/mol
|
4 G_PER_L |
CHEBI:86345
MgCl2 x 6 H2O
|
|
| 3 | MgSO4·7H2O | 3.45 G_PER_L | ||
| 4 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.25 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 5 |
CaCl2·2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.14 G_PER_L |
CHEBI:86158
CaCl2 x 2 H2O
|
|
| 6 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.14 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 7 |
NaCl
Cl.Na 58.443 g/mol
|
18 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 8 |
NaHCO3
CHO3.Na 84.006 g/mol
|
3 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 9 | Bacto Yeast Extract (Difco) | 0.5 G_PER_L |
FOODON:03315426
Yeast extract
|
|
| 10 |
Sodium lactate
C3H5O3.Na 112.06 g/mol
|
1.5 G_PER_L |
CHEBI:75228
sodium lactate
|
|
| 11 |
Fe(NH4)2(SO4)2·7H2O
Fe.7H2O.2H4N.2O4S 410.154 g/mol
|
2 MG_PER_L |
CHEBI:131378
Fe(NH4)2(SO4)2 x 7 H2O
|
|
| 12 | Trace element solution* | 10 ML_PER_L | ||
| 13 |
Resazurin
C12H7NO4 229.191 g/mol
|
1 MG_PER_L |
CHEBI:8806
Resazurin
|
|
| 14 |
Na2S·9H2O
9H2O.2Na.S 240.182 g/mol
|
0.5 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
|
| 15 |
Distilled water
H2O 18.015 g/mol
|
1 L |
CHEBI:15377
water
|
Preparation
- Dissolve ingredients except bicarbonate and sulfide.
- Bring to a boil for a few minutes.
- Cool quickly to room temperature while gassing with N2/CO2 (80/20).
- Add sodium bicarbonate and adjust pH to 6.9.
- Distribute 20 ml portions into 100 ml serum bottles under N2/CO2.
- Seal and pressurize the bottles to 2 bar overpressure, then autoclave.
- Before use, reduce the medium with sodium sulfide from an anaerobic sterile neutral stock solution.
Solutions
Trace element solution
| Ingredient | Concentration | Notes |
|---|---|---|
| Nitrilotriacetic acid | 1.5 G_PER_L | |
| MgSO4·7H2O | 3 G_PER_L | |
| MnSO4·2H2O | 0.5 G_PER_L | |
| NaCl | 1 G_PER_L | |
| FeSO4·7H2O | 0.1 G_PER_L | |
| CoSO4·7H2O | 0.18 G_PER_L | |
| CaCl2·2H2O | 0.1 G_PER_L | |
| ZnSO4·7H2O | 0.18 G_PER_L | |
| CuSO4·5H2O | 0.01 G_PER_L | |
| KAl(SO4)2·12H2O | 4 MG_PER_L | |
| H3BO3 | 0.01 G_PER_L | |
| Na2MoO4·2H2O | 0.01 G_PER_L | |
| NiCl2·6H2O | 0.025 G_PER_L | |
| Na2SeO3·5H2O | 0.8 MG_PER_L | |
| Na2WO4·H2O | 0.8 MG_PER_L | |
| Distilled water | 1 L |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-02-20T00:22:35.956250Z | nbrc-import | Imported from NBRC | Source: NBRC, Media No. 392, URL: http://www.nbrc.nite.go.jp/NBRC2/NBRCMediumDetailServlet?NO=392. Imported via ethical web scraping. |
| 2026-03-09T08:04:49.190629+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 1 solution(s) from ingredients |
| 2026-03-13T03:09:20.327223Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 68 duplicate ingredient(s) |
| 2026-03-13T06:19:49.245314Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007492 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name |
| 2026-05-16T09:03:06.700712+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-08-19T21:54:22.929998+00:00 | recover_nbrc_composition.py | Recovered composition from source HTML | Re-parsed the NBRC medium 392 composition table from the preserved scrape; 15 ingredient(s) restored, 1 stock solution(s) nested rather than flattened, 1 unparsed solution blob(s) removed (#299). |
| 2026-08-20T19:01:16.030626+00:00 | apply_mim_groundings.py | Adopted MIM published grounding | Grounded 12 ingredient(s) from MIM's ingredient_mappings.sssom.tsv (2026-08-18), exactMatch only, where this record carried no CHEBI term (#308). |
| 2026-09-07T00:00:00-07:00 | repair_nbrc_partial_score25.py | RESOLVED_NBRC_PARTIAL_SCORE25 | Preserved the recovered NBRC Medium 392 composition table. |