393

CultureMech:007492 bacterial COMPLEX LIQUID

Overview

External ontology
nbrc.medium:392 (source link unavailable) — NBRC Medium 392
pH
6.9
Notes
Source: NBRC Medium 392 | Link: https://www.nite.go.jp/nbrc/catalogue/NBRCMediumDetailServlet?NO=392 The NBRC Archaeoglobus Medium table lists final pH 6.9 after bicarbonate addition, anaerobic N2/CO2 preparation in sealed serum bottles, sodium sulfide reduction before use, and a nested trace element solution brought to pH 7.0 with KOH.

Composition

flowchart LR
    CultureMech_007492["393"]
    ing0_KCl["KCl"]
    CultureMech_007492 --> ing0_KCl
    CHEBI_32588["CHEBI:32588"]
    ing0_KCl -.-> CHEBI_32588
    ing1_MgCl2_6H2O["MgCl2·6H2O"]
    CultureMech_007492 --> ing1_MgCl2_6H2O
    CHEBI_86345["CHEBI:86345"]
    ing1_MgCl2_6H2O -.-> CHEBI_86345
    ing2_MgSO4_7H2O["MgSO4·7H2O"]
    CultureMech_007492 --> ing2_MgSO4_7H2O
    ing3_NH4Cl["NH4Cl"]
    CultureMech_007492 --> ing3_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing3_NH4Cl -.-> CHEBI_31206
    ing4_CaCl2_2H2O["CaCl2·2H2O"]
    CultureMech_007492 --> ing4_CaCl2_2H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_2H2O -.-> CHEBI_86158
    ing5_K2HPO4["K2HPO4"]
    CultureMech_007492 --> ing5_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing5_K2HPO4 -.-> CHEBI_131527
    ing6_NaCl["NaCl"]
    CultureMech_007492 --> ing6_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing6_NaCl -.-> CHEBI_26710
    ing7_NaHCO3["NaHCO3"]
    CultureMech_007492 --> ing7_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing7_NaHCO3 -.-> CHEBI_32139
    ing8_Bacto_Yeast_Extract__Difco_["Bacto Yeast Extract (Difco)"]
    CultureMech_007492 --> ing8_Bacto_Yeast_Extract__Difco_
    ing9_Sodium_lactate["Sodium lactate"]
    CultureMech_007492 --> ing9_Sodium_lactate
    CHEBI_75228["CHEBI:75228"]
    ing9_Sodium_lactate -.-> CHEBI_75228
    ing10_Fe_NH4_2_SO4_2_7H2O["Fe(NH4)2(SO4)2·7H2O"]
    CultureMech_007492 --> ing10_Fe_NH4_2_SO4_2_7H2O
    CHEBI_131378["CHEBI:131378"]
    ing10_Fe_NH4_2_SO4_2_7H2O -.-> CHEBI_131378
    ing11_Trace_element_solution_["Trace element solution*"]
    CultureMech_007492 --> ing11_Trace_element_solution_
    ing12_Resazurin["Resazurin"]
    CultureMech_007492 --> ing12_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing12_Resazurin -.-> CHEBI_8806
    ing13_Na2S_9H2O["Na2S·9H2O"]
    CultureMech_007492 --> ing13_Na2S_9H2O
    CHEBI_76209["CHEBI:76209"]
    ing13_Na2S_9H2O -.-> CHEBI_76209
    ing14_Distilled_water["Distilled water"]
    CultureMech_007492 --> ing14_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing14_Distilled_water -.-> CHEBI_15377

Ingredients (15)

# Ingredient Concentration Ontology Notes
1 KCl
Cl.K 74.551 g/mol
0.34 G_PER_L CHEBI:32588
potassium chloride
2 MgCl2·6H2O
2Cl.6H2O.Mg 203.301 g/mol
4 G_PER_L CHEBI:86345
MgCl2 x 6 H2O
3 MgSO4·7H2O 3.45 G_PER_L
4 NH4Cl
Cl.H4N 53.492 g/mol
0.25 G_PER_L CHEBI:31206
ammonium chloride
5 CaCl2·2H2O
Ca.2Cl.2H2O 147.014 g/mol
0.14 G_PER_L CHEBI:86158
CaCl2 x 2 H2O
6 K2HPO4
HO4P.2K 174.174 g/mol
0.14 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
7 NaCl
Cl.Na 58.443 g/mol
18 G_PER_L CHEBI:26710
sodium chloride
8 NaHCO3
CHO3.Na 84.006 g/mol
3 G_PER_L CHEBI:32139
sodium hydrogencarbonate
9 Bacto Yeast Extract (Difco) 0.5 G_PER_L FOODON:03315426
Yeast extract
10 Sodium lactate
C3H5O3.Na 112.06 g/mol
1.5 G_PER_L CHEBI:75228
sodium lactate
11 Fe(NH4)2(SO4)2·7H2O
Fe.7H2O.2H4N.2O4S 410.154 g/mol
2 MG_PER_L CHEBI:131378
Fe(NH4)2(SO4)2 x 7 H2O
12 Trace element solution* 10 ML_PER_L
13 Resazurin
C12H7NO4 229.191 g/mol
1 MG_PER_L CHEBI:8806
Resazurin
14 Na2S·9H2O
9H2O.2Na.S 240.182 g/mol
0.5 G_PER_L CHEBI:76209
sodium sulfide nonahydrate
15 Distilled water
H2O 18.015 g/mol
1 L CHEBI:15377
water

Preparation

  1. Dissolve ingredients except bicarbonate and sulfide.
  2. Bring to a boil for a few minutes.
  3. Cool quickly to room temperature while gassing with N2/CO2 (80/20).
  4. Add sodium bicarbonate and adjust pH to 6.9.
  5. Distribute 20 ml portions into 100 ml serum bottles under N2/CO2.
  6. Seal and pressurize the bottles to 2 bar overpressure, then autoclave.
  7. Before use, reduce the medium with sodium sulfide from an anaerobic sterile neutral stock solution.

Solutions

Trace element solution

Stock composition
IngredientConcentrationNotes
Nitrilotriacetic acid 1.5 G_PER_L
MgSO4·7H2O 3 G_PER_L
MnSO4·2H2O 0.5 G_PER_L
NaCl 1 G_PER_L
FeSO4·7H2O 0.1 G_PER_L
CoSO4·7H2O 0.18 G_PER_L
CaCl2·2H2O 0.1 G_PER_L
ZnSO4·7H2O 0.18 G_PER_L
CuSO4·5H2O 0.01 G_PER_L
KAl(SO4)2·12H2O 4 MG_PER_L
H3BO3 0.01 G_PER_L
Na2MoO4·2H2O 0.01 G_PER_L
NiCl2·6H2O 0.025 G_PER_L
Na2SeO3·5H2O 0.8 MG_PER_L
Na2WO4·H2O 0.8 MG_PER_L
Distilled water 1 L

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-02-20T00:22:35.956250Z nbrc-import Imported from NBRC Source: NBRC, Media No. 392, URL: http://www.nbrc.nite.go.jp/NBRC2/NBRCMediumDetailServlet?NO=392. Imported via ethical web scraping.
2026-03-09T08:04:49.190629+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 1 solution(s) from ingredients
2026-03-13T03:09:20.327223Z data-quality-cleanup-v1.0 Data quality fixes Merged 68 duplicate ingredient(s)
2026-03-13T06:19:49.245314Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007492
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name
2026-05-16T09:03:06.700712+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=1
2026-08-19T21:54:22.929998+00:00 recover_nbrc_composition.py Recovered composition from source HTML Re-parsed the NBRC medium 392 composition table from the preserved scrape; 15 ingredient(s) restored, 1 stock solution(s) nested rather than flattened, 1 unparsed solution blob(s) removed (#299).
2026-08-20T19:01:16.030626+00:00 apply_mim_groundings.py Adopted MIM published grounding Grounded 12 ingredient(s) from MIM's ingredient_mappings.sssom.tsv (2026-08-18), exactMatch only, where this record carried no CHEBI term (#308).
2026-09-07T00:00:00-07:00 repair_nbrc_partial_score25.py RESOLVED_NBRC_PARTIAL_SCORE25 Preserved the recovered NBRC Medium 392 composition table.