Overview
- External ontology
- nbrc.medium:936 (source link unavailable) — NBRC Medium 936
- Notes
- Source: NBRC Medium 936 | Link: https://www.nite.go.jp/nbrc/catalogue/NBRCMediumDetailServlet?NO=936 NBRC lists Hydrogen-oxidizing bacteria medium with KP buffer, MgCl2·6H2O, CaCl2·2H2O, NH4Cl, Na2S2O3, trace element and vitamin stocks, Na2CO3, and distilled water. The basal medium is dispensed under H2/CO2/O2, KP buffer is autoclaved separately under N2, vitamin solution is filter-sterilized, and inoculated vessels are pressurized to 150 kPa with H2/CO2/O2. NBRC does not list a final medium pH.
Composition
flowchart LR
CultureMech_007506["Hydrogen-oxidizing bacteria medium"]
ing0_KP_buffer_["KP buffer*"]
CultureMech_007506 --> ing0_KP_buffer_
ing1_MgCl2_6H2O["MgCl2·6H2O"]
CultureMech_007506 --> ing1_MgCl2_6H2O
CHEBI_86345["CHEBI:86345"]
ing1_MgCl2_6H2O -.-> CHEBI_86345
ing2_CaCl2_2H2O["CaCl2·2H2O"]
CultureMech_007506 --> ing2_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing2_CaCl2_2H2O -.-> CHEBI_86158
ing3_NH4Cl["NH4Cl"]
CultureMech_007506 --> ing3_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing3_NH4Cl -.-> CHEBI_31206
ing4_Na2S2O3["Na2S2O3"]
CultureMech_007506 --> ing4_Na2S2O3
CHEBI_132112["CHEBI:132112"]
ing4_Na2S2O3 -.-> CHEBI_132112
ing5_Trace_elements_solution__["Trace elements solution**"]
CultureMech_007506 --> ing5_Trace_elements_solution__
ing6_Vitamin_solution___["Vitamin solution***"]
CultureMech_007506 --> ing6_Vitamin_solution___
ing7_Na2CO3["Na2CO3"]
CultureMech_007506 --> ing7_Na2CO3
CHEBI_29377["CHEBI:29377"]
ing7_Na2CO3 -.-> CHEBI_29377
ing8_Distilled_water["Distilled water"]
CultureMech_007506 --> ing8_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing8_Distilled_water -.-> CHEBI_15377
Ingredients (9)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | KP buffer* | 10 ML_PER_L | ||
| 2 |
MgCl2·6H2O
2Cl.6H2O.Mg 203.301 g/mol
|
0.75 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 3 |
CaCl2·2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.15 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 4 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.54 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 5 |
Na2S2O3
2Na.O3S2 158.111 g/mol
|
1.6 G_PER_L |
CHEBI:132112
sodium thiosulfate
|
|
| 6 | Trace elements solution** | 2 ML_PER_L | ||
| 7 | Vitamin solution*** | 2 ML_PER_L | ||
| 8 |
Na2CO3
CO3.2Na 105.988 g/mol
|
0.5 G_PER_L |
CHEBI:29377
sodium carbonate
|
|
| 9 |
Distilled water
H2O 18.015 g/mol
|
1 L |
CHEBI:15377
water
|
Preparation
- Mix ingredients except KP buffer and vitamin solution.
- Dispense the medium into suitable culture vessels under a stream of H2/CO2/O2 (75/20/5) and seal with butyl rubber stoppers.
- Separately autoclave KP buffer under an N2 atmosphere.
- Sterilize vitamin solution by filtration.
- Prior to inoculation, aseptically add KP buffer and vitamin solution.
- Pressurize inoculated vessels to 150 kPa with H2/CO2/O2 (75/20/5).
- For the trace elements solution, first dissolve NTA, adjust pH to 6.5 with NaOH, then add minerals; final pH is 7.0.
Solutions
KP buffer
| Ingredient | Concentration | Notes |
|---|---|---|
| KH2PO4 | 119 G_PER_L | |
| K2HPO4 | 21 G_PER_L | |
| Distilled water | 1 L |
Trace elements solution
| Ingredient | Concentration | Notes |
|---|---|---|
| Nitrilotriacetic acid (NTA) | 12.8 G_PER_L | |
| FeCl3·6H2O | 1.35 G_PER_L | |
| MnCl2·4H2O | 0.1 G_PER_L | |
| CoCl2·6H2O | 0.024 G_PER_L | |
| CaCl2·2H2O | 0.1 G_PER_L | |
| ZnCl2 | 0.1 G_PER_L | |
| CuCl2·2H2O | 0.025 G_PER_L | |
| H3BO3 | 0.01 G_PER_L | |
| Na2MoO4·2H2O | 0.024 G_PER_L | |
| NaCl | 1 G_PER_L | |
| NiCl2·6H2O | 0.12 G_PER_L | |
| Na2SeO4 | 0.004 G_PER_L | |
| Na2WO4 | 0.004 G_PER_L | |
| KAl(SO4)2·12H2O | 0.02 G_PER_L | |
| Distilled water | 1 L | |
| NaOH | variable VARIABLE | NBRC Medium 936 uses NaOH to adjust the trace elements solution to pH 6.5 before mineral addition. |
Vitamin solution
| Ingredient | Concentration | Notes |
|---|---|---|
| Biotin | 2 MG_PER_L | |
| Folic acid | 2 MG_PER_L | |
| Pyridoxine-HCl | 10 MG_PER_L | |
| Thiamine-HCl | 5 MG_PER_L | |
| Riboflavin | 5 MG_PER_L | |
| Nicotinic acid | 5 MG_PER_L | |
| Ca-pantothenate | 5 MG_PER_L | |
| p-Aminobenzoic acid | 1 MG_PER_L | |
| Vitamin B12 | 0.01 MG_PER_L | |
| Distilled water | 1 L |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-02-20T00:22:35.993417Z | nbrc-import | Imported from NBRC | Source: NBRC, Media No. 936, URL: http://www.nbrc.nite.go.jp/NBRC2/NBRCMediumDetailServlet?NO=936. Imported via ethical web scraping. |
| 2026-03-09T08:04:43.134031+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 1 solution(s) from ingredients |
| 2026-03-13T03:09:13.229494Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 90 duplicate ingredient(s) |
| 2026-03-13T06:19:49.288100Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007506 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name |
| 2026-05-16T09:03:06.751204+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-08-19T21:54:23.081793+00:00 | recover_nbrc_composition.py | Recovered composition from source HTML | Re-parsed the NBRC medium 936 composition table from the preserved scrape; 9 ingredient(s) restored, 3 stock solution(s) nested rather than flattened, 1 unparsed solution blob(s) removed (#299). |
| 2026-08-20T19:01:16.166599+00:00 | apply_mim_groundings.py | Adopted MIM published grounding | Grounded 18 ingredient(s) from MIM's ingredient_mappings.sssom.tsv (2026-08-18), exactMatch only, where this record carried no CHEBI term (#308). |
| 2026-08-26T02:12:33.141574+00:00 | apply_mim_groundings.py | Adopted MIM published grounding | Grounded 1 ingredient(s) from MIM's ingredient_mappings.sssom.tsv (2026-08-18), exactMatch only, where this record carried no CHEBI term (#308). |
| 2026-09-11T00:00:00-07:00 | repair_nbrc_937_score15.py | RESOLVED_NBRC_937_SCORE15 | Added the NBRC Medium 936 source term and official title, grounded the recovered formula and stocks, added the source-defined NaOH trace-stock adjuster, converted preparation instructions into ordered steps, and added the official NBRC reference. |